Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11b20
         (368 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0912 - 21520088-21520426,21520534-21520674,21521235-215212...    33   0.053
01_01_1166 + 9287840-9288040,9289752-9289799,9292166-9292282,929...    33   0.093
04_04_1696 + 35448667-35449641,35449726-35450562,35450667-354510...    29   0.86 
06_01_0078 - 628946-629524,629620-629684,629814-629935,630042-63...    29   1.1  
10_06_0191 - 11631066-11631538,11632011-11632319,11632374-11632572     28   2.6  
08_02_0801 + 21349434-21349438,21349952-21349978,21351175-213512...    28   2.6  

>10_08_0912 -
           21520088-21520426,21520534-21520674,21521235-21521294,
           21521394-21521493,21521591-21521904,21522253-21522621,
           21522993-21523104,21523627-21523787
          Length = 531

 Score = 33.5 bits (73), Expect = 0.053
 Identities = 28/102 (27%), Positives = 52/102 (50%), Gaps = 2/102 (1%)
 Frame = -1

Query: 314 GDDDATRLHYSNAHAKQTLATLFANRNHSSFYEYAITFVSTLLFKNNLNLMVACNLINTL 135
           G+ + T L  SN      ++++ A++NH     YAIT    LL +    + ++ +  N  
Sbjct: 282 GNGEDTNL--SNTKCTVEVSSISADKNHMPDVSYAITHY-RLLVEQLERVDLSMSETNIK 338

Query: 134 INFEINVFGKSLLLSKFVNFCIANSD--GVTIQHKMLTNVLS 15
           + F INV+  SL++  ++ + I NS    + + HK   ++LS
Sbjct: 339 LAFWINVY-NSLVMHAYLAYGIPNSSLKRMALFHKWFESILS 379


>01_01_1166 +
           9287840-9288040,9289752-9289799,9292166-9292282,
           9293018-9293700,9295214-9297190,9298330-9298441,
           9299848-9299904
          Length = 1064

 Score = 32.7 bits (71), Expect = 0.093
 Identities = 16/46 (34%), Positives = 28/46 (60%)
 Frame = +1

Query: 70  MQKLTNLLSNKLLPNTLISKLINVLIKLHATIKFKLFLKSNVLTNV 207
           +  L+NL+   L  N L S+L+ +L KLH+ +  KL++ S + T +
Sbjct: 861 ISSLSNLVRLSLRENYLESELVKILGKLHSLLSLKLYVNSYLGTEL 906


>04_04_1696 + 35448667-35449641,35449726-35450562,35450667-35451001,
            35451371-35451497,35451594-35451752,35451872-35453053,
            35453164-35453424,35453513-35453761
          Length = 1374

 Score = 29.5 bits (63), Expect = 0.86
 Identities = 13/48 (27%), Positives = 30/48 (62%)
 Frame = -1

Query: 152  NLINTLINFEINVFGKSLLLSKFVNFCIANSDGVTIQHKMLTNVLSFL 9
            +L+++L++ E++V GKS L  K+   C+  +   T++ K   + L+++
Sbjct: 1086 SLLSSLLHPEVSVNGKSSLKGKYSVICVHANQFYTLRKKCCPSELAYI 1133


>06_01_0078 -
           628946-629524,629620-629684,629814-629935,630042-630129,
           630508-630819,630908-632189,632296-632784
          Length = 978

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -1

Query: 131 NFEINVFGKSLLLSKFVN-FCIANSDGVTIQHKMLTNVLSFLWK 3
           N  I+V+G+   L K V  F  A   G+ I  K  TN+LSF  K
Sbjct: 720 NIMISVYGQGGKLEKAVEMFSAAQELGLPIDEKTYTNMLSFYGK 763


>10_06_0191 - 11631066-11631538,11632011-11632319,11632374-11632572
          Length = 326

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 13/64 (20%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
 Frame = -1

Query: 194 TLLFKNNLNLMVACNLINTLINFEINVFGKSLLLSKFVNFCIANSD-----GVTIQHKML 30
           T ++++ L+++V   L+N +  +   + G +++ ++F ++C A        G+ ++H+  
Sbjct: 162 TTIYRSKLSMIVLEKLLNKICRYVRIIAGNTVVKARFQDYCKAKKKPARMFGIDVKHRWN 221

Query: 29  TNVL 18
           T  L
Sbjct: 222 TMYL 225


>08_02_0801 +
           21349434-21349438,21349952-21349978,21351175-21351249,
           21351333-21351369,21351469-21351552,21351821-21351881,
           21351961-21352067,21352162-21352227,21352366-21352461
          Length = 185

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -1

Query: 236 NHSSFYEYAITFVSTLLFKNNLNLMVACNLINTLINFE 123
           N   FY YA  +  T   K  + + VAC L+N ++  +
Sbjct: 82  NFQDFYPYAFRYCLTEDKKKCIEIPVACELLNLVLGLQ 119


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,616,909
Number of Sequences: 37544
Number of extensions: 116475
Number of successful extensions: 231
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)