Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11b20
(368 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z99281-50|CAD56259.3| 837|Caenorhabditis elegans Hypothetical p... 29 1.0
Z95622-1|CAB09132.2| 480|Caenorhabditis elegans Hypothetical pr... 29 1.4
Z68131-3|CAA92219.2| 480|Caenorhabditis elegans Hypothetical pr... 29 1.4
AF497823-1|AAM18101.1| 479|Caenorhabditis elegans putative Na-H... 29 1.4
AC024817-2|AAU87810.1| 520|Caenorhabditis elegans Hypothetical ... 28 2.4
AL031635-11|CAA21038.3| 446|Caenorhabditis elegans Hypothetical... 27 4.2
Z83116-5|CAB05568.2| 450|Caenorhabditis elegans Hypothetical pr... 26 7.3
Z79598-4|CAB01868.2| 745|Caenorhabditis elegans Hypothetical pr... 26 7.3
AF038619-5|AAB92078.6| 1262|Caenorhabditis elegans Gut on exteri... 26 7.3
AB073209-1|BAB70472.1| 1262|Caenorhabditis elegans rac effector ... 26 7.3
Z69384-3|CAA93418.1| 475|Caenorhabditis elegans Hypothetical pr... 26 9.7
M96145-1|AAA28057.1| 562|Caenorhabditis elegans elastase protein. 26 9.7
AF016680-3|AAB66165.2| 562|Caenorhabditis elegans Abnormal gut ... 26 9.7
>Z99281-50|CAD56259.3| 837|Caenorhabditis elegans Hypothetical
protein Y57G11C.37 protein.
Length = 837
Score = 29.1 bits (62), Expect = 1.0
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = -1
Query: 266 QTLATLFANRNHSSFYEYAITFVSTLLFKNNLNLMVACNLINTLINFEINVF 111
+++ +++A R F E I F LLF L C LIN LI ++ F
Sbjct: 613 ESVMSVYA-RPLDDFLEMFIQFGYVLLFSPAFPLAAVCALINNLIEIRVDAF 663
>Z95622-1|CAB09132.2| 480|Caenorhabditis elegans Hypothetical
protein B0395.1 protein.
Length = 480
Score = 28.7 bits (61), Expect = 1.4
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Frame = -1
Query: 263 TLATLFANRNHSSFYEYAITFVSTLLFKNNLNLMVACNLINTLINFEIN------VFGKS 102
T +FA +N FY++ IT V TLLF ++ + +++ +N VFG+S
Sbjct: 83 TSCFIFAFQN---FYDFNITIVDTLLFSTVISAVDPVAVLSVFEEIHVNKLLYITVFGES 139
Query: 101 LL 96
LL
Sbjct: 140 LL 141
>Z68131-3|CAA92219.2| 480|Caenorhabditis elegans Hypothetical
protein B0395.1 protein.
Length = 480
Score = 28.7 bits (61), Expect = 1.4
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Frame = -1
Query: 263 TLATLFANRNHSSFYEYAITFVSTLLFKNNLNLMVACNLINTLINFEIN------VFGKS 102
T +FA +N FY++ IT V TLLF ++ + +++ +N VFG+S
Sbjct: 83 TSCFIFAFQN---FYDFNITIVDTLLFSTVISAVDPVAVLSVFEEIHVNKLLYITVFGES 139
Query: 101 LL 96
LL
Sbjct: 140 LL 141
>AF497823-1|AAM18101.1| 479|Caenorhabditis elegans putative Na-H
exchanger isoform 1 protein.
Length = 479
Score = 28.7 bits (61), Expect = 1.4
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Frame = -1
Query: 263 TLATLFANRNHSSFYEYAITFVSTLLFKNNLNLMVACNLINTLINFEIN------VFGKS 102
T +FA +N FY++ IT V TLLF ++ + +++ +N VFG+S
Sbjct: 82 TSCFIFAFQN---FYDFNITIVDTLLFSTVISAVDPVAVLSVFEEIHVNKLLYITVFGES 138
Query: 101 LL 96
LL
Sbjct: 139 LL 140
>AC024817-2|AAU87810.1| 520|Caenorhabditis elegans Hypothetical
protein Y54G2A.38 protein.
Length = 520
Score = 27.9 bits (59), Expect = 2.4
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -1
Query: 293 LHYSNAHAKQTLATLFA-NRNHSSFYEYAITFVSTLLFKNNLNLMVACNLINT 138
LH+ NA+ + + TL A NR S F+ + + ++LF +L ++ + T
Sbjct: 98 LHFGNAYFQYFMVTLMAVNRTTSIFFYFVNEKIWSILFPLSLGAVILVEVFFT 150
>AL031635-11|CAA21038.3| 446|Caenorhabditis elegans Hypothetical
protein Y47D3B.3 protein.
Length = 446
Score = 27.1 bits (57), Expect = 4.2
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = -1
Query: 116 VFGKSLLLSKFVNFCIANSDGVTIQHKMLTNVL 18
+FG++ L+SK++ CI+ D I K+ T ++
Sbjct: 15 IFGQNFLISKYLRTCISLLDPQLIDLKLQTRMV 47
>Z83116-5|CAB05568.2| 450|Caenorhabditis elegans Hypothetical
protein M01B2.6 protein.
Length = 450
Score = 26.2 bits (55), Expect = 7.3
Identities = 13/51 (25%), Positives = 21/51 (41%)
Frame = -1
Query: 290 HYSNAHAKQTLATLFANRNHSSFYEYAITFVSTLLFKNNLNLMVACNLINT 138
+YS + + H+ F +TF TL+F+N M N+ T
Sbjct: 98 YYSGTSDSEITINQVSKLTHAIFAFVQLTFDGTLVFRNKNRFMALRNIAKT 148
>Z79598-4|CAB01868.2| 745|Caenorhabditis elegans Hypothetical
protein C44H4.4 protein.
Length = 745
Score = 26.2 bits (55), Expect = 7.3
Identities = 20/75 (26%), Positives = 37/75 (49%)
Frame = -1
Query: 311 DDDATRLHYSNAHAKQTLATLFANRNHSSFYEYAITFVSTLLFKNNLNLMVACNLINTLI 132
D+ + +N H KQ + N SS Y F++ ++ N++L ++ + I
Sbjct: 85 DEINVDVELTNEHKKQAKSNPLGNLGDSSSYG----FMNKII--ENMSLYIS----SVEI 134
Query: 131 NFEINVFGKSLLLSK 87
NF+ +VFG S +L +
Sbjct: 135 NFDSDVFGGSFMLQR 149
>AF038619-5|AAB92078.6| 1262|Caenorhabditis elegans Gut on exterior
protein 2 protein.
Length = 1262
Score = 26.2 bits (55), Expect = 7.3
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -1
Query: 125 EINVFGKSLLLSKFVNFCIANSDGVTIQH-KMLTNVLSF 12
++ +G L++ F+N C A S + QH K +T +L +
Sbjct: 888 QVYYWGSKSLMAAFMNICNAYSQCIGTQHLKAITRLLHY 926
>AB073209-1|BAB70472.1| 1262|Caenorhabditis elegans rac effector
protein.
Length = 1262
Score = 26.2 bits (55), Expect = 7.3
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -1
Query: 125 EINVFGKSLLLSKFVNFCIANSDGVTIQH-KMLTNVLSF 12
++ +G L++ F+N C A S + QH K +T +L +
Sbjct: 888 QVYYWGSKSLMAAFMNICNAYSQCIGTQHLKAITRLLHY 926
>Z69384-3|CAA93418.1| 475|Caenorhabditis elegans Hypothetical
protein T11G6.3 protein.
Length = 475
Score = 25.8 bits (54), Expect = 9.7
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -1
Query: 284 SNAHAKQTLATLFANRNHSSFYEYAITFVSTLLF 183
+NA LATL A+ + Y+Y +ST LF
Sbjct: 178 TNASVGNILATLIASWTVNIGYQYPFLIISTALF 211
>M96145-1|AAA28057.1| 562|Caenorhabditis elegans elastase protein.
Length = 562
Score = 25.8 bits (54), Expect = 9.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 83 VNFCIANSDGVTIQHKMLTNVLSF 12
VNF SDGV+I+H + L+F
Sbjct: 511 VNFLNIRSDGVSIEHGLFQEPLAF 534
>AF016680-3|AAB66165.2| 562|Caenorhabditis elegans Abnormal gut
esterase protein 1 protein.
Length = 562
Score = 25.8 bits (54), Expect = 9.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 83 VNFCIANSDGVTIQHKMLTNVLSF 12
VNF SDGV+I+H + L+F
Sbjct: 511 VNFLNIRSDGVSIEHGLFQEPLAF 534
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,263,544
Number of Sequences: 27780
Number of extensions: 125977
Number of successful extensions: 320
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 320
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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