Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11b20
         (368 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   2.6  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   3.5  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   4.6  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   4.6  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   4.6  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 92  SKFVNFCIANSDGVTIQHKMLTNVLSFLW 6
           S F  F +AN+DG       L++ + F W
Sbjct: 590 SPFGRFKLANTDGTEEDALNLSSAVWFAW 618


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 3.5
 Identities = 14/56 (25%), Positives = 28/56 (50%)
 Frame = +1

Query: 49  VTPSLLAMQKLTNLLSNKLLPNTLISKLINVLIKLHATIKFKLFLKSNVLTNVMAY 216
           +T  ++  +K      N +LP  LIS L  ++  L A    K+ L  ++L +++ +
Sbjct: 223 ITFYIIIRRKTLFYTVNLILPTVLISFLCVLVFYLPAEAGEKVTLGISILLSLVVF 278


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 9/37 (24%), Positives = 20/37 (54%)
 Frame = +1

Query: 67  AMQKLTNLLSNKLLPNTLISKLINVLIKLHATIKFKL 177
           A+ +   LL + +LP   +  ++N  ++  A + F+L
Sbjct: 76  AVNEFMQLLKHGMLPRGQVFTMMNKEMRHQAVVLFRL 112


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -2

Query: 331 VP**IAATTTQHDYTIQTRTQNKHLQLYL 245
           VP   A+ TT+   T  T    KH+++++
Sbjct: 379 VPTTTASPTTEPSTTTSTTISQKHIKVFV 407


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 9/37 (24%), Positives = 20/37 (54%)
 Frame = +1

Query: 67  AMQKLTNLLSNKLLPNTLISKLINVLIKLHATIKFKL 177
           A+ +   LL + +LP   +  ++N  ++  A + F+L
Sbjct: 76  AVNEFMQLLKHGMLPRGQVFTMMNKEMRHQAVVLFRL 112


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,649
Number of Sequences: 438
Number of extensions: 1376
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8804355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)