Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11b19
(457 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L06498-1|AAA60286.1| 119|Homo sapiens ribosomal protein S20 pro... 192 4e-49
BC087850-1|AAH87850.1| 119|Homo sapiens ribosomal protein S20 p... 192 4e-49
BC007507-1|AAH07507.1| 119|Homo sapiens ribosomal protein S20 p... 192 4e-49
AB061842-1|BAB79480.1| 119|Homo sapiens ribosomal protein S20 p... 192 4e-49
AB007156-1|BAA25820.1| 60|Homo sapiens ribosomal protein S20 p... 126 5e-29
D25538-1|BAA05021.2| 1088|Homo sapiens KIAA0037 protein. 30 4.3
BC126271-1|AAI26272.1| 1080|Homo sapiens adenylate cyclase 7 pro... 30 4.3
M16276-1|AAA59823.1| 269|Homo sapiens HLA-DRB2 protein. 29 10.0
AY663414-1|AAU88032.1| 261|Homo sapiens MHC class II antigen pr... 29 10.0
AY375869-1|AAQ88043.1| 234|Homo sapiens MHC class II antigen pr... 29 10.0
AY375868-1|AAQ88042.1| 234|Homo sapiens MHC class II antigen pr... 29 10.0
AF000447-1|AAB86436.1| 255|Homo sapiens MHC class II HLA-DQB1 p... 29 10.0
AB029009-1|BAA83038.1| 902|Homo sapiens KIAA1086 protein protein. 29 10.0
>L06498-1|AAA60286.1| 119|Homo sapiens ribosomal protein S20
protein.
Length = 119
Score = 192 bits (469), Expect = 4e-49
Identities = 94/112 (83%), Positives = 100/112 (89%), Gaps = 1/112 (0%)
Frame = -2
Query: 333 KDIEKPQAEVS-PIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRI 157
KD K E IHRIRITLTSRNV+SLEKVCADLI GAK++ L+VKGPVRMPTK LRI
Sbjct: 4 KDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRI 63
Query: 156 TTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVT 1
TTRKTPCGEGSKTWDRFQMRIHKR+IDLHSPSEIVKQITSI+IEPGVEVEVT
Sbjct: 64 TTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVT 115
>BC087850-1|AAH87850.1| 119|Homo sapiens ribosomal protein S20
protein.
Length = 119
Score = 192 bits (469), Expect = 4e-49
Identities = 94/112 (83%), Positives = 100/112 (89%), Gaps = 1/112 (0%)
Frame = -2
Query: 333 KDIEKPQAEVS-PIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRI 157
KD K E IHRIRITLTSRNV+SLEKVCADLI GAK++ L+VKGPVRMPTK LRI
Sbjct: 4 KDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRI 63
Query: 156 TTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVT 1
TTRKTPCGEGSKTWDRFQMRIHKR+IDLHSPSEIVKQITSI+IEPGVEVEVT
Sbjct: 64 TTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVT 115
>BC007507-1|AAH07507.1| 119|Homo sapiens ribosomal protein S20
protein.
Length = 119
Score = 192 bits (469), Expect = 4e-49
Identities = 94/112 (83%), Positives = 100/112 (89%), Gaps = 1/112 (0%)
Frame = -2
Query: 333 KDIEKPQAEVS-PIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRI 157
KD K E IHRIRITLTSRNV+SLEKVCADLI GAK++ L+VKGPVRMPTK LRI
Sbjct: 4 KDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRI 63
Query: 156 TTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVT 1
TTRKTPCGEGSKTWDRFQMRIHKR+IDLHSPSEIVKQITSI+IEPGVEVEVT
Sbjct: 64 TTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVT 115
>AB061842-1|BAB79480.1| 119|Homo sapiens ribosomal protein S20
protein.
Length = 119
Score = 192 bits (469), Expect = 4e-49
Identities = 94/112 (83%), Positives = 100/112 (89%), Gaps = 1/112 (0%)
Frame = -2
Query: 333 KDIEKPQAEVS-PIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRI 157
KD K E IHRIRITLTSRNV+SLEKVCADLI GAK++ L+VKGPVRMPTK LRI
Sbjct: 4 KDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRI 63
Query: 156 TTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVT 1
TTRKTPCGEGSKTWDRFQMRIHKR+IDLHSPSEIVKQITSI+IEPGVEVEVT
Sbjct: 64 TTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVT 115
>AB007156-1|BAA25820.1| 60|Homo sapiens ribosomal protein S20
protein.
Length = 60
Score = 126 bits (303), Expect = 5e-29
Identities = 57/60 (95%), Positives = 59/60 (98%)
Frame = -2
Query: 195 KGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGV 16
KGPVRMPTK LRITTRKTPCGEGSKTWDRFQMRIHKR+IDLHSPSEIVKQITSI+IEPGV
Sbjct: 1 KGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGV 60
>D25538-1|BAA05021.2| 1088|Homo sapiens KIAA0037 protein.
Length = 1088
Score = 29.9 bits (64), Expect = 4.3
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = -1
Query: 394 KSCLSRPEFNKQHGSRC-SVRQRHRETPGRGL-PYSPHQDHSYFSQCALTREGL 239
+ +S E + +G R SV QRHR TP R + P +D SY + EGL
Sbjct: 511 RESVSSGETHVPNGRRPKSVPQRHRRTPDRSMSPKGRSEDDSYDDEMLSAIEGL 564
>BC126271-1|AAI26272.1| 1080|Homo sapiens adenylate cyclase 7
protein.
Length = 1080
Score = 29.9 bits (64), Expect = 4.3
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = -1
Query: 394 KSCLSRPEFNKQHGSRC-SVRQRHRETPGRGL-PYSPHQDHSYFSQCALTREGL 239
+ +S E + +G R SV QRHR TP R + P +D SY + EGL
Sbjct: 503 RESVSSGETHVPNGRRPKSVPQRHRRTPDRSMSPKGRSEDDSYDDEMLSAIEGL 556
>M16276-1|AAA59823.1| 269|Homo sapiens HLA-DRB2 protein.
Length = 269
Score = 28.7 bits (61), Expect = 10.0
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = -2
Query: 213 KQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQIT 40
K+ LR+ G +R PT L + TP EG + F ++ K + + +E V+ +T
Sbjct: 4 KKALRIPGGLRAPTVTLMLAMLSTPVAEGRDPPEDFVLQF-KAMCYFTNGTERVRYVT 60
>AY663414-1|AAU88032.1| 261|Homo sapiens MHC class II antigen
protein.
Length = 261
Score = 28.7 bits (61), Expect = 10.0
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = -2
Query: 213 KQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQIT 40
K+ LR+ G +R PT L + TP EG + F ++ K + + +E V+ +T
Sbjct: 4 KKALRIPGGLRAPTVTLMLAMLSTPVAEGRDPPEDFVLQF-KAMCYFTNGTERVRYVT 60
>AY375869-1|AAQ88043.1| 234|Homo sapiens MHC class II antigen
protein.
Length = 234
Score = 28.7 bits (61), Expect = 10.0
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = -2
Query: 213 KQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQIT 40
K+ LR+ G +R PT L + TP EG + F ++ K + + +E V+ +T
Sbjct: 4 KKALRIPGGLRAPTVTLMLAMLSTPVAEGRDPPEDFVLQF-KAMCYFTNGTERVRYVT 60
>AY375868-1|AAQ88042.1| 234|Homo sapiens MHC class II antigen
protein.
Length = 234
Score = 28.7 bits (61), Expect = 10.0
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = -2
Query: 213 KQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQIT 40
K+ LR+ G +R PT L + TP EG + F ++ K + + +E V+ +T
Sbjct: 4 KKALRIPGGLRAPTVTLMLAMLSTPVAEGRDPPEDFVLQF-KAMCYFTNGTERVRYVT 60
>AF000447-1|AAB86436.1| 255|Homo sapiens MHC class II HLA-DQB1
protein.
Length = 255
Score = 28.7 bits (61), Expect = 10.0
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = -2
Query: 213 KQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQIT 40
K+ LR+ G +R PT L + TP EG + F ++ K + + +E V+ +T
Sbjct: 1 KKALRIPGGLRAPTVTLMLAMLSTPVAEGRDPPEDFVLQF-KAMCYFTNGTERVRYVT 57
>AB029009-1|BAA83038.1| 902|Homo sapiens KIAA1086 protein protein.
Length = 902
Score = 28.7 bits (61), Expect = 10.0
Identities = 14/51 (27%), Positives = 21/51 (41%)
Frame = -1
Query: 313 GRGLPYSPHQDHSYFSQCALTREGLC*PNQWSQETEAACKGPSPHANQDPA 161
G+ ++D YF AL + + T+ AC PSPH + A
Sbjct: 57 GQSAAARSYEDRPYFQSAALQSGRMTAADSGQPGTQEACGQPSPHGSHSHA 107
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,273,775
Number of Sequences: 237096
Number of extensions: 1603194
Number of successful extensions: 3451
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3446
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3815180866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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