Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11b16
(874 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyce... 177 1e-45
SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosacchar... 51 2e-07
SPAC23D3.07 |pup1||20S proteasome component beta 2|Schizosacchar... 39 8e-04
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch... 29 0.86
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 28 1.5
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual 28 1.5
SPCC18.12c |||rRNA processing protein|Schizosaccharomyces pombe|... 27 2.6
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz... 27 4.6
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos... 26 6.1
>SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 262
Score = 177 bits (432), Expect = 1e-45
Identities = 86/216 (39%), Positives = 134/216 (62%), Gaps = 6/216 (2%)
Frame = -1
Query: 649 SASPITTTTTVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMKVNDLILLGCGGDYADF 470
+ PI T ++V+ +KF G +IA D L SYGSLARF D R+ KV D ++G GGD +D+
Sbjct: 36 TVQPIVTGSSVLALKFADGVMIAADNLASYGSLARFYDVERLTKVGDNTIVGAGGDISDY 95
Query: 469 QYLKDIIQQKIIDESCVGDGLQLKPRSLHCWLTRVLYNKRSKMDPLWNSYVVAGI--QDG 296
Q ++ ++++ I E GDG L+P +H +L++VLY +R+K+DP WN +VAG+ ++
Sbjct: 96 QQIQRLLEKLEIKEGNYGDGYALQPSYIHEYLSKVLYARRNKLDPYWNQLIVAGVDGENK 155
Query: 295 EPFLGAVDKLGTAYEDAVISNGLGAYMATPLLRDAVDKG---PLDQETAIAVVRKSMEVL 125
EP++ D GT Y I+ G ++A P+LR A D L +E+A A + + M VL
Sbjct: 156 EPYVAFADLRGTTYSAPAIATGFAMHLALPMLRKATDDDRWKTLSKESARATIDECMRVL 215
Query: 124 FYRDARAFQRYQLGVVTAEGIKI-TDEELKHDWSLA 20
FYRDAR+ ++ + +T EGI+ TD+ + W+ A
Sbjct: 216 FYRDARSLNKFSVATITPEGIEFQTDQSVSSKWAFA 251
>SPAC22F8.06 |pam1||20S proteasome component beta
6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 225
Score = 51.2 bits (117), Expect = 2e-07
Identities = 43/147 (29%), Positives = 69/147 (46%), Gaps = 1/147 (0%)
Frame = -1
Query: 622 TVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMKVNDLILLGCGGDYADFQYLKDIIQQ 443
T + + D ++AGDT G R PRV +V D +++G G AD L IQQ
Sbjct: 15 TTVAIAGDGFAILAGDTRSVNGYNINTRFQPRVHEVGDDLVIGASGFEADALALVKRIQQ 74
Query: 442 KIIDESCVGDGLQLKPRSLHCWLTRVLYNKRSKMDPLWNSYVVAGI-QDGEPFLGAVDKL 266
+ ID ++ +S C + +LY KR P + VAGI ++G+ + + D +
Sbjct: 75 R-IDLYHDNHERKMSAQSCACMVRTLLYGKR--FFPYYVYTTVAGIDKEGKGEIYSFDPV 131
Query: 265 GTAYEDAVISNGLGAYMATPLLRDAVD 185
G+ + + G A TP L + V+
Sbjct: 132 GSYEREWCRAGGSAANFITPFLDNQVN 158
>SPAC23D3.07 |pup1||20S proteasome component beta
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 39.1 bits (87), Expect = 8e-04
Identities = 44/191 (23%), Positives = 88/191 (46%), Gaps = 2/191 (1%)
Frame = -1
Query: 634 TTTTTVIGVKFDKGCVIAG-DTLGSYGSLARFRDCPRVMKVNDLILLGCGGDYADFQYLK 458
+T TT++GV K C++ G DT + G + ++C ++ ++ I G AD +++
Sbjct: 33 STGTTIVGV-IAKDCIVLGADTRATAGPIIADKNCKKLHLISPNIWCAGAGTAADTEFVT 91
Query: 457 DIIQQKIIDESCVGDGLQLKPRSLHCWLTRVLYNKRSKMDPLWNSYVVAGIQDGE-PFLG 281
+I I S KPR + LT +L + +Y+V G D + P L
Sbjct: 92 SMISSNIELHSLY---TNRKPRVVTA-LT-MLKQHLFRYQGHIGAYLVLGGYDCKGPHLF 146
Query: 280 AVDKLGTAYEDAVISNGLGAYMATPLLRDAVDKGPLDQETAIAVVRKSMEVLFYRDARAF 101
+ G++ + ++ G G+ A +L + + L++ A+ +V++++E + D +
Sbjct: 147 TIAAHGSSDKLPYVALGSGSLAAISVL-ETKYQPDLERHEAMELVKEAIEAGIFNDLGSG 205
Query: 100 QRYQLGVVTAE 68
L V+ E
Sbjct: 206 SNCDLVVIDEE 216
>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 29.1 bits (62), Expect = 0.86
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = -2
Query: 750 CGKTDRRLEHFIIFLEMLPQLLHPGTVYRILQLTQRAPSRPPQRSLELSLTRD 592
CG+T L+H ++ E Q LHP V Q Q+ PPQ+ +L + D
Sbjct: 49 CGETG--LKHSLVHFE---QTLHPIVVTIARQPKQKINDEPPQKITKLEIRED 96
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 28.3 bits (60), Expect = 1.5
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -1
Query: 760 PTPLWQNGPSPGAFYNFPGNASTIAPSRHGVQDFTA-HSASPITTT 626
P+PL P+P F N P AS P+ TA SASP+ +T
Sbjct: 364 PSPLQNTNPAPSTFPN-PSVASPAFPNSSTSNPSTAPASASPLAST 408
>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 28.3 bits (60), Expect = 1.5
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -1
Query: 721 FYNFPGNASTIAPSRHGVQDFTAHSASPITTTTTVI 614
+YN G +S + + HG+ DF +H + T T I
Sbjct: 254 YYNNDGASSWVFTADHGMSDFGSHGDGNLDNTRTPI 289
>SPCC18.12c |||rRNA processing protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 260
Score = 27.5 bits (58), Expect = 2.6
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = -1
Query: 475 DFQYLKDIIQQKIIDESCVGDGLQ--LKPRSLHCWLTRVLYNKRSKM 341
D +LKD+ QQKI ++ + +Q +KP C + R LY+K ++
Sbjct: 31 DADFLKDLSQQKIDIQAALARTVQGAIKPMITQCCI-RQLYSKSDEL 76
>SPCC794.08 |||HEAT repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 798
Score = 26.6 bits (56), Expect = 4.6
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 242 HSIFICCSQFINSSEKGFTILNTGDHVAVPEGIH 343
HSIF CC + ++SS I+N+ +V VP I+
Sbjct: 309 HSIFFCCLRCLSSSR----IVNSETNVMVPYMIY 338
>SPAC926.09c |fas1||fatty acid synthase beta subunit
Fas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2073
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -1
Query: 592 CVIAGDTLGSYGSLARFRDCPRVMKVNDLILL 497
C AG +LG Y +L+ D + + DL+ L
Sbjct: 1822 CAFAGHSLGEYSALSAMGDVLSIEALVDLVFL 1853
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,683,333
Number of Sequences: 5004
Number of extensions: 77487
Number of successful extensions: 239
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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