Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11b16
(874 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0728 - 19771975-19772093,19772131-19772224,19772322-197725... 152 3e-37
02_05_0884 - 32483735-32483866,32484417-32484491,32484707-324847... 39 0.006
06_01_0285 - 2090427-2090558,2091045-2091119,2091334-2091407,209... 37 0.024
05_01_0588 + 5278013-5278153,5278641-5278782,5278923-5279019,527... 36 0.042
03_05_0782 - 27658855-27659211,27660417-27660540,27660714-27660871 35 0.074
05_07_0290 + 29016410-29018920 30 2.1
03_02_0750 + 10909130-10909616,10912257-10912916,10913139-109135... 30 2.1
06_01_1052 + 8312752-8312862,8312969-8313041,8313285-8313362,831... 29 3.7
06_01_0837 - 6355315-6355342,6356185-6356361,6356579-6356662,635... 29 3.7
12_02_0578 - 20753834-20754418 29 6.4
10_08_0898 + 21424379-21424792,21424974-21425723 29 6.4
04_04_1296 + 32437089-32437386,32437422-32437429 29 6.4
01_06_0945 + 33217310-33217427,33218820-33219433 29 6.4
01_02_0074 + 10869546-10871373,10871449-10872077 29 6.4
12_02_0981 - 25027336-25027596,25028017-25028361,25028681-250288... 28 8.5
03_01_0403 - 3133568-3134440,3135131-3135494,3136341-3136408,313... 28 8.5
>09_04_0728 - 19771975-19772093,19772131-19772224,19772322-19772507,
19772596-19772767,19772854-19772983,19773060-19773136,
19774109-19774194,19774508-19774585,19775916-19776045,
19776379-19776423,19776508-19776618,19776801-19777057,
19777153-19777302,19777899-19778008,19778426-19778546
Length = 621
Score = 152 bits (369), Expect = 3e-37
Identities = 77/218 (35%), Positives = 124/218 (56%), Gaps = 5/218 (2%)
Frame = -1
Query: 658 TAHSASPITTTTTVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMKVNDLILLGCGGDY 479
T + P T +++I +K+ G ++A DT SYGS R++ R+ V L+G G++
Sbjct: 359 TQRTQYPYVTGSSIIALKYKDGVIMASDTGASYGSTLRYKSVERIKAVGKHSLIGASGEF 418
Query: 478 ADFQYLKDIIQQKIIDESCVGDGLQLKPRSLHCWLTRVLYNKRSKMDPLWNSYVVAGIQD 299
+DFQ + + + + + DG L P+ +H +LTRV+YN+R+K DPLWNS V+ G++
Sbjct: 419 SDFQEILRYLDELTLSDHMWDDGNSLGPKEVHSYLTRVMYNRRNKFDPLWNSLVIGGVKK 478
Query: 298 G----EPFLGAVDKLGTAYEDAVISNGLGAYMATPLLRDAVDKGPLDQETAIAVVRKSME 131
G E +LG V+ +GT +E+ I+ G G +MA P+LR + + E A+ +V K +
Sbjct: 479 GPKGEEKYLGMVNMIGTHFEENHIATGFGNHMAIPILRTEW-REDMTFEEAVKLVEKCLL 537
Query: 130 VLFYRDARAFQRYQLGVVTAEGIKI-TDEELKHDWSLA 20
VL YRD + ++Q+ +T EG I LK W A
Sbjct: 538 VLLYRDRSSINKFQIAKITTEGATIYPPYSLKTYWGFA 575
>02_05_0884 -
32483735-32483866,32484417-32484491,32484707-32484780,
32485180-32485291,32485476-32485548,32485674-32485729,
32486046-32486122,32486799-32486940
Length = 246
Score = 38.7 bits (86), Expect = 0.006
Identities = 47/191 (24%), Positives = 80/191 (41%), Gaps = 3/191 (1%)
Frame = -1
Query: 625 TTVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMKVNDLILLGCGGDYADFQYLKDIIQ 446
TT++GV +D G V+A D+ S G R ++ ++ D + + G AD Q + D ++
Sbjct: 26 TTIVGVCYDGGVVLAADSRTSTGMYVANRASDKITQLTDNVYICRSGSAADTQVISDYVR 85
Query: 445 QKIIDESCVGDGLQLKPRSLHCWLTRVLYNKRSKMDPLWNSYVVAG---IQDGEPFLGAV 275
+ + + G Q + L R+L + M L +V G + G+ F +V
Sbjct: 86 Y-FLHQHTIQLG-QPATVKVAANLIRLLAYQNKNM--LQAGMIVGGWDKYEGGQIF--SV 139
Query: 274 DKLGTAYEDAVISNGLGAYMATPLLRDAVDKGPLDQETAIAVVRKSMEVLFYRDARAFQR 95
GT G G+ LL D K + QE A V K + + RD +
Sbjct: 140 PLGGTILRQPFAIGGSGSSYLYGLL-DHEWKEGMSQEEAEKFVVKVVSLAIARDGASGGV 198
Query: 94 YQLGVVTAEGI 62
+ + A+G+
Sbjct: 199 VRTVTINADGV 209
>06_01_0285 -
2090427-2090558,2091045-2091119,2091334-2091407,
2091792-2091903,2092036-2092108,2092291-2092346,
2092679-2092755,2093384-2093525
Length = 246
Score = 36.7 bits (81), Expect = 0.024
Identities = 46/191 (24%), Positives = 80/191 (41%), Gaps = 3/191 (1%)
Frame = -1
Query: 625 TTVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMKVNDLILLGCGGDYADFQYLKDIIQ 446
TT++GV +D G V+A D+ S G R ++ ++ D + + G AD Q + + ++
Sbjct: 26 TTIVGVCYDGGVVLAADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAADTQVISEYVR 85
Query: 445 QKIIDESCVGDGLQLKPRSLHCWLTRVLYNKRSKMDPLWNSYVVAG---IQDGEPFLGAV 275
+ + + G Q + L R+L + M L +V G + G+ F +V
Sbjct: 86 Y-FLHQHTIQLG-QPATVKVAANLIRLLAYQNKNM--LQAGMIVGGWDKYEGGQIF--SV 139
Query: 274 DKLGTAYEDAVISNGLGAYMATPLLRDAVDKGPLDQETAIAVVRKSMEVLFYRDARAFQR 95
GT G G+ LL D K + QE A V K + + RD +
Sbjct: 140 PLGGTILRQPFAIGGSGSSYLYGLL-DHEWKEGMSQEEAEKFVVKVVSLAIARDGASGGV 198
Query: 94 YQLGVVTAEGI 62
+ + A+G+
Sbjct: 199 VRTVTINADGV 209
>05_01_0588 +
5278013-5278153,5278641-5278782,5278923-5279019,
5279130-5279199,5279284-5279388,5279531-5279629,
5280062-5280152,5280238-5280311
Length = 272
Score = 35.9 bits (79), Expect = 0.042
Identities = 16/67 (23%), Positives = 34/67 (50%)
Frame = -1
Query: 637 ITTTTTVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMKVNDLILLGCGGDYADFQYLK 458
+ T TT++G+ F G V+ DT + G + ++C ++ + I G AD + +
Sbjct: 35 LKTGTTIVGLVFQDGVVLGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVT 94
Query: 457 DIIQQKI 437
D++ ++
Sbjct: 95 DMVSSQL 101
>03_05_0782 - 27658855-27659211,27660417-27660540,27660714-27660871
Length = 212
Score = 35.1 bits (77), Expect = 0.074
Identities = 44/188 (23%), Positives = 80/188 (42%), Gaps = 1/188 (0%)
Frame = -1
Query: 619 VIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMKVNDLILLGCGGDYADFQYLKDIIQQK 440
VIGV V+A DT L D +VM ++ L+G G+ D + I QK
Sbjct: 4 VIGVVGRDFAVVAADTSAVQSILVHKTDEDKVMVLDSHKLMGASGEPGDRVQFTEFI-QK 62
Query: 439 IIDESCVGDGLQLKPRSLHCWLTRVLYNKRSKMDPLWNSYVVAGI-QDGEPFLGAVDKLG 263
+ + + L + TR + +P + + ++AG D L +D +
Sbjct: 63 NLHLYQFRNNIPLSTAAT-ANFTRGELATALRKNPYYVNVLLAGYDSDVGASLYYIDYIA 121
Query: 262 TAYEDAVISNGLGAYMATPLLRDAVDKGPLDQETAIAVVRKSMEVLFYRDARAFQRYQLG 83
T ++ + G G+Y L+ D + + + E A+ +V K ++ + R A Q + +
Sbjct: 122 TFHKIEKGAFGYGSYFCLSLM-DKLYRPDMSVEEAVDLVDKCIKEIRLRLVVAPQNFIIK 180
Query: 82 VVTAEGIK 59
+V EG +
Sbjct: 181 IVDKEGAR 188
>05_07_0290 + 29016410-29018920
Length = 836
Score = 30.3 bits (65), Expect = 2.1
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 11/70 (15%)
Frame = -1
Query: 532 PRVMKVNDLILLGC-GGDYADFQYL-----KDIIQQKIIDES-----CVGDGLQLKPRSL 386
P V+ LI C G+Y D Y KD +Q ++ S C G LQ K + L
Sbjct: 426 PNVVSWTSLISGSCHNGEYEDSFYFCHEMQKDGVQPSLVTMSVLLRACAGLALQKKGKEL 485
Query: 385 HCWLTRVLYN 356
HC+ R Y+
Sbjct: 486 HCFALRRAYD 495
>03_02_0750 +
10909130-10909616,10912257-10912916,10913139-10913544,
10914376-10914757,10914918-10915679,10916106-10916165,
10916695-10917105
Length = 1055
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +1
Query: 283 RERVHHPEY-RRPRSCSRGDPSYSSCCRGHESTSSAENG 396
R ++HP Y RRPRSCS G CCR + G
Sbjct: 208 RALLNHPNYARRPRSCS-GCVMCGGCCRRRGGAGAGGGG 245
>06_01_1052 + 8312752-8312862,8312969-8313041,8313285-8313362,
8313443-8313523,8313706-8313779,8313865-8313919,
8314031-8314079,8314222-8314359,8314455-8314536,
8315131-8315209,8315357-8315400,8315479-8315673,
8316110-8316185,8317427-8317507,8317623-8317703,
8318128-8318204,8318402-8318499,8318672-8318809,
8319397-8319478,8319564-8319642,8319885-8319931,
8320014-8320228,8320330-8320450,8320529-8320648,
8320731-8320849,8320964-8321036,8321112-8321231,
8321538-8321606,8321756-8321926,8322004-8322051,
8322192-8322333,8323244-8323341,8323684-8323828,
8323928-8324013,8324112-8324222,8324456-8324530,
8324836-8324901,8325036-8325224,8325315-8325425,
8326616-8326696,8327192-8327371
Length = 1385
Score = 29.5 bits (63), Expect = 3.7
Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Frame = -1
Query: 778 MGDTMNPTPLWQNGPS---PGAFY-NFPGNASTIAPSRHGVQDFTAHSAS 641
MG + PLWQ GP PG Y FPGN + VQ++ S S
Sbjct: 1059 MGQALAGVPLWQLGPESRHPGVPYIVFPGNVGDNSALAKVVQNWACPSRS 1108
>06_01_0837 -
6355315-6355342,6356185-6356361,6356579-6356662,
6356989-6357542,6358086-6358322
Length = 359
Score = 29.5 bits (63), Expect = 3.7
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = -1
Query: 529 RVMKVNDLILLGCGGDYADFQYLKDIIQQKIIDES 425
RVM V+DL+LLG YAD ++ ++ + K+ +S
Sbjct: 48 RVMMVSDLMLLGSDATYAD-RFFRNHVMSKLFAKS 81
>12_02_0578 - 20753834-20754418
Length = 194
Score = 28.7 bits (61), Expect = 6.4
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Frame = -1
Query: 208 PLLRDAVDK-----GPLDQETAIAVVRKSMEVLFYRDARAFQRYQ-LGV 80
PL R AVD P+D+ + +A+V S +F R R F+R + LGV
Sbjct: 78 PLRRVAVDPVRRSASPVDRRSTVALVIPSRAAVFLRSVRRFRRLRCLGV 126
>10_08_0898 + 21424379-21424792,21424974-21425723
Length = 387
Score = 28.7 bits (61), Expect = 6.4
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = -1
Query: 784 AFMGDTMNPTPLWQNGPSPGAFYNFPGNASTIAPSRHG 671
A MGD M L +PGA FP +A+ A HG
Sbjct: 62 AAMGDAMRVDDLLDLSNTPGAHDFFPASAAAAAAGDHG 99
>04_04_1296 + 32437089-32437386,32437422-32437429
Length = 101
Score = 28.7 bits (61), Expect = 6.4
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +1
Query: 166 LGPEVLYPLRPSAEESPCKLLARSRSQHLHMLFPIYQQLRERVHH 300
LGPE + P SA ++P +LL R ++HL + RER H
Sbjct: 33 LGPESMQPA--SAMQAPPQLLLRYSNRHLRNAVAVPAYERERESH 75
>01_06_0945 + 33217310-33217427,33218820-33219433
Length = 243
Score = 28.7 bits (61), Expect = 6.4
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = -3
Query: 107 RVPTLPARRGHG*G 66
R+PTLP RRGHG G
Sbjct: 87 RLPTLPGRRGHGGG 100
>01_02_0074 + 10869546-10871373,10871449-10872077
Length = 818
Score = 28.7 bits (61), Expect = 6.4
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = -1
Query: 730 PGAFYNFPGNASTIAPSRHGVQ--DFTAHSASPITTTTTVIG 611
PG Y F G A + P HG+ +FT SA+ T +G
Sbjct: 642 PGRTYKFYGGADVLYPFGHGLSYTNFTYASATAAAPVTVKVG 683
>12_02_0981 -
25027336-25027596,25028017-25028361,25028681-25028827,
25028906-25029970
Length = 605
Score = 28.3 bits (60), Expect = 8.5
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = -1
Query: 481 YADFQYLKDIIQQKIIDESCVGD----GLQLKPRSLHCWLTRVLY 359
+AD++ L D +++D V D G PR LH W R LY
Sbjct: 42 HADWRGLPDAAVSRVLDRLPVVDLFRLGYLFSPRWLHIWRARPLY 86
>03_01_0403 -
3133568-3134440,3135131-3135494,3136341-3136408,
3137184-3137857,3138093-3138105
Length = 663
Score = 28.3 bits (60), Expect = 8.5
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -1
Query: 517 VNDLILLGCGGDYADFQYLKDIIQQKIIDESCVGDG 410
V D +L CG Y +Q + ++ +D SC G+G
Sbjct: 490 VRDHVLFLCGLGYTRYQIRQMVLPSPSLDTSCGGEG 525
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,201,714
Number of Sequences: 37544
Number of extensions: 572760
Number of successful extensions: 1770
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1769
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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