Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11b16
         (874 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF510719-1|AAP47148.1|  591|Anopheles gambiae ammonium transport...    28   0.43 
AY146757-1|AAO12072.1|  246|Anopheles gambiae odorant-binding pr...    25   2.3  
AJ618928-1|CAF02007.1|  285|Anopheles gambiae odorant-binding pr...    25   2.3  
AJ416109-1|CAC94781.1|  234|Anopheles gambiae PROSAg25 protein p...    25   3.0  
AF457555-1|AAL68785.1|  161|Anopheles gambiae salivary gland 1-l...    25   4.0  
AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.         24   5.3  
AJ007394-1|CAA07489.1|  112|Anopheles gambiae mucin protein.           24   5.3  
AF046924-1|AAC08530.1|  122|Anopheles gambiae mucin protein.           24   5.3  
CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           24   7.0  
DQ342048-1|ABC69940.1|  847|Anopheles gambiae STIP protein.            23   9.2  
AY341150-1|AAR13714.1|  164|Anopheles gambiae aminopeptidase N p...    23   9.2  
AF395080-1|AAK97462.1|  537|Anopheles gambiae zinc finger transc...    23   9.2  

>AF510719-1|AAP47148.1|  591|Anopheles gambiae ammonium
           transport-like protein protein.
          Length = 591

 Score = 27.9 bits (59), Expect = 0.43
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = -1

Query: 775 GDTMNPTPLWQNGPSPGAFYNFPGNASTIAPSRHGVQDFTAHSASPITTTTTVI 614
           G TM         PSPGAF +   N S + P   G+ D      + + T++ +I
Sbjct: 4   GTTMGSPGAASTTPSPGAFQSLARNNSYVIP---GLYDLNVEDTNWVLTSSFII 54


>AY146757-1|AAO12072.1|  246|Anopheles gambiae odorant-binding
           protein AgamOBP39 protein.
          Length = 246

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 11/24 (45%), Positives = 18/24 (75%), Gaps = 2/24 (8%)
 Frame = -2

Query: 147 YVKVWRCFSTEM--LARSNATSSA 82
           YVK++RCF+ ++  L R+NA + A
Sbjct: 223 YVKLYRCFADQISALVRANANAMA 246


>AJ618928-1|CAF02007.1|  285|Anopheles gambiae odorant-binding
           protein OBPjj83a protein.
          Length = 285

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 11/24 (45%), Positives = 18/24 (75%), Gaps = 2/24 (8%)
 Frame = -2

Query: 147 YVKVWRCFSTEM--LARSNATSSA 82
           YVK++RCF+ ++  L R+NA + A
Sbjct: 262 YVKLYRCFADQISALVRANANAMA 285


>AJ416109-1|CAC94781.1|  234|Anopheles gambiae PROSAg25 protein
           protein.
          Length = 234

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 22/111 (19%), Positives = 41/111 (36%)
 Frame = -1

Query: 361 YNKRSKMDPLWNSYVVAGIQDGEPFLGAVDKLGTAYEDAVISNGLGAYMATPLLRDAVDK 182
           Y +   + P   S ++ G  DG P+L   D  G  +     + G  A      L     +
Sbjct: 121 YTQSGGVRPFGVSLLICGWDDGRPYLFQCDPSGAYFAWKATAMGKNANNGKTFLEKRYSE 180

Query: 181 GPLDQETAIAVVRKSMEVLFYRDARAFQRYQLGVVTAEGIKITDEELKHDW 29
             L+ + A+     +++  F     A    ++G+  A G +  D     D+
Sbjct: 181 -DLELDDAVHTAILTLKEGFEGQMNA-DNIEVGICDANGFRRLDPSDVQDY 229


>AF457555-1|AAL68785.1|  161|Anopheles gambiae salivary gland 1-like
           4 protein protein.
          Length = 161

 Score = 24.6 bits (51), Expect = 4.0
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -2

Query: 738 DRRLEHFIIFLEMLPQLLHPGTVYRILQLTQRAPSRPPQRSLELSL 601
           +RRLE+ +  +  LP      T+Y++LQ       RP Q    L++
Sbjct: 63  NRRLENLLDLVRQLPARQDQRTLYQLLQ--PEIMKRPAQNQSTLAM 106


>AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.
          Length = 679

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +1

Query: 223 LLARSRSQHLHMLFPIYQQLRERVHHPEY 309
           LL   +  H H   P  QQ    VHHP +
Sbjct: 115 LLNHHQHHHQHPHLPHVQQHHPSVHHPAH 143


>AJ007394-1|CAA07489.1|  112|Anopheles gambiae mucin protein.
          Length = 112

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 697 STIAPSRHGVQDFTAHSASPITTTTTVIG 611
           +T+AP+   V   T  + +P TTTT   G
Sbjct: 34  TTVAPTTTTVAPTTTTTVAPTTTTTVAPG 62


>AF046924-1|AAC08530.1|  122|Anopheles gambiae mucin protein.
          Length = 122

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 697 STIAPSRHGVQDFTAHSASPITTTTTVIG 611
           +T+AP+   V   T  + +P TTTT   G
Sbjct: 34  TTVAPTTTTVAPTTTTTVAPTTTTTVAPG 62


>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 23/69 (33%), Positives = 25/69 (36%)
 Frame = +1

Query: 190 LRPSAEESPCKLLARSRSQHLHMLFPIYQQLRERVHHPEYRRPRSCSRGDPSYSSCCRGH 369
           L  SA ES C   A SR        PI          P   RPR   +  PS  + C G 
Sbjct: 674 LMSSARES-CGASALSRKLLTESAPPIAPMSPRPNRFPS--RPRRQQQHQPSALAGCSGS 730

Query: 370 ESTSSAENG 396
            S   A NG
Sbjct: 731 SSGGLARNG 739


>DQ342048-1|ABC69940.1|  847|Anopheles gambiae STIP protein.
          Length = 847

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 372 VNQQCRERGLSWRPSP 419
           V+Q+C ERG+ + P P
Sbjct: 783 VSQKCAERGIIFAPMP 798


>AY341150-1|AAR13714.1|  164|Anopheles gambiae aminopeptidase N
           protein.
          Length = 164

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 740 VLPQRRGVHRVPHKSHCYIIFNTKLN 817
           V PQ+ G +RV +  + +I   TKLN
Sbjct: 118 VNPQQTGYYRVNYDENLWIRLITKLN 143


>AF395080-1|AAK97462.1|  537|Anopheles gambiae zinc finger
           transcription factor pannier protein.
          Length = 537

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 659 YSSLSEPHHDHHNGH 615
           +S  + PHH HH+ H
Sbjct: 496 HSHHAHPHHHHHHHH 510


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 961,592
Number of Sequences: 2352
Number of extensions: 20265
Number of successful extensions: 49
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 93439926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)