Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11b16
(874 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81079-4|CAB03081.1| 236|Caenorhabditis elegans Hypothetical pr... 149 2e-36
L14745-10|AAK71356.1| 258|Caenorhabditis elegans Proteasome bet... 32 0.47
AF303265-1|AAG50223.1| 258|Caenorhabditis elegans proteasome co... 32 0.47
Z48544-9|CAA88436.2| 250|Caenorhabditis elegans Hypothetical pr... 31 1.4
Z36719-1|CAA85311.2| 576|Caenorhabditis elegans Hypothetical pr... 30 2.5
U61944-3|AAB03119.1| 818|Caenorhabditis elegans Hypothetical pr... 29 3.3
AF067222-2|AAC17018.2| 458|Caenorhabditis elegans Hypothetical ... 29 4.3
>Z81079-4|CAB03081.1| 236|Caenorhabditis elegans Hypothetical
protein F39H11.5 protein.
Length = 236
Score = 149 bits (362), Expect = 2e-36
Identities = 82/227 (36%), Positives = 138/227 (60%), Gaps = 12/227 (5%)
Frame = -1
Query: 664 DFTAHSASPITTTTTVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMKVNDLILLGCGG 485
D + +P T T+VI +++ G V+ D + SYG +AR+++ R KVND +L+ GG
Sbjct: 5 DEVQRTLNPTCTGTSVIALQYKTGVVVLTDRVVSYGKMARYKNVSRQYKVNDNVLIAFGG 64
Query: 484 DYADFQYLKDIIQQKIIDESCVGDGLQLKPRSLHCWLTRVLYNKRSKMDPLWNSYVVAGI 305
D+ADF +L+++I+++++ + P++LH +LT +LY KR KM+P+WN+ VVAG+
Sbjct: 65 DHADFHWLQNVIERQVLLWKRFDQ--DIGPKALHGYLTSLLYAKRCKMNPVWNTLVVAGV 122
Query: 304 QDGE--------PFLGAVDKLGTAYEDAVISNGLGAYMATPLLRDAVDK--GPLDQETAI 155
++ E PF+G + + G AY+ I+ GLGA++ + D K L +E A
Sbjct: 123 EEEEKNNKETSTPFIGVITQKGCAYQVKHIATGLGAFLLNQAVEDEWRKKGEDLSREEAE 182
Query: 154 AVVRKSMEVLFYRDARAFQRYQLGVVTA-EGIKI-TDEELKHDWSLA 20
AV+RKS+E+ Y D A +++G V A EG+ + +E++ DWS+A
Sbjct: 183 AVLRKSLELTLYHDCVADNEFEIGRVDATEGVVLGKEEKIIGDWSIA 229
>L14745-10|AAK71356.1| 258|Caenorhabditis elegans Proteasome beta
subunit protein 6 protein.
Length = 258
Score = 32.3 bits (70), Expect = 0.47
Identities = 34/146 (23%), Positives = 62/146 (42%), Gaps = 2/146 (1%)
Frame = -1
Query: 631 TTTTVIGVKFDKGCVIAGDTLGSYGSLARF-RDCPRVMKVNDLILLGCGGDYADFQYLKD 455
+T + G F ++A DT + + RD ++ +ND I+L G Y D LK
Sbjct: 53 STCAISGENF---AIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSGFYGDVLQLKK 109
Query: 454 IIQQKIIDESCVGDGLQLKPRSLHCWLTRVLYNKRSKMDPLWNSYVVAGIQD-GEPFLGA 278
++Q + + + + L+R LY +R P + ++AGI + G+ + +
Sbjct: 110 VLQSR-LHKYRFDYRSDMSVDLCAELLSRNLYYRR--FFPYYTGAILAGIDEHGKGAVFS 166
Query: 277 VDKLGTAYEDAVISNGLGAYMATPLL 200
D +G ++G M P L
Sbjct: 167 YDPIGCIERLGYSASGAAEPMIIPFL 192
>AF303265-1|AAG50223.1| 258|Caenorhabditis elegans proteasome
component C5 protein.
Length = 258
Score = 32.3 bits (70), Expect = 0.47
Identities = 34/146 (23%), Positives = 62/146 (42%), Gaps = 2/146 (1%)
Frame = -1
Query: 631 TTTTVIGVKFDKGCVIAGDTLGSYGSLARF-RDCPRVMKVNDLILLGCGGDYADFQYLKD 455
+T + G F ++A DT + + RD ++ +ND I+L G Y D LK
Sbjct: 53 STCAISGENF---AIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSGFYGDVLQLKK 109
Query: 454 IIQQKIIDESCVGDGLQLKPRSLHCWLTRVLYNKRSKMDPLWNSYVVAGIQD-GEPFLGA 278
++Q + + + + L+R LY +R P + ++AGI + G+ + +
Sbjct: 110 VLQSR-LHKYRFDYRSDMSVDLCAELLSRNLYYRR--FFPYYTGAILAGIDEHGKGAVFS 166
Query: 277 VDKLGTAYEDAVISNGLGAYMATPLL 200
D +G ++G M P L
Sbjct: 167 YDPIGCIERLGYSASGAAEPMIIPFL 192
>Z48544-9|CAA88436.2| 250|Caenorhabditis elegans Hypothetical
protein ZK945.2 protein.
Length = 250
Score = 30.7 bits (66), Expect = 1.4
Identities = 25/82 (30%), Positives = 36/82 (43%)
Frame = -1
Query: 700 ASTIAPSRHGVQDFTAHSASPITTTTTVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVM 521
AST +P Q A A + T+I ++ G V+ D L S L PR+
Sbjct: 12 ASTFSPDGRIFQVEYAQKA--VDNAGTMIAIRGKNGVVVVADKLIS-SKLYTDNANPRMF 68
Query: 520 KVNDLILLGCGGDYADFQYLKD 455
VND + + G+Y D LK+
Sbjct: 69 NVNDNVGVAVAGNYPDGFALKN 90
>Z36719-1|CAA85311.2| 576|Caenorhabditis elegans Hypothetical
protein C06C3.3 protein.
Length = 576
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -2
Query: 741 TDRRLEHFIIFLEMLPQLLHPGTVYRILQLTQRAP 637
T ++ +H+I+FL+ L LL T R L TQ P
Sbjct: 37 TRKQFKHWIVFLDALTDLLRTATAVRRLFTTQGIP 71
>U61944-3|AAB03119.1| 818|Caenorhabditis elegans Hypothetical
protein T12E12.3 protein.
Length = 818
Score = 29.5 bits (63), Expect = 3.3
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -2
Query: 372 LVSSTTRGVRWIPSGTATWSPVFRMVNPFSELLINWEQHMKML 244
LV + GV+ +P G A W+ R V S+ NW H + +
Sbjct: 376 LVEADKEGVQLMPKGIAFWNDFVR-VTRSSKSATNWSSHFRKI 417
>AF067222-2|AAC17018.2| 458|Caenorhabditis elegans Hypothetical
protein H11E01.2 protein.
Length = 458
Score = 29.1 bits (62), Expect = 4.3
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +2
Query: 290 GFTILNTGDHVAVPEGIHLT 349
GFT+ +TG VA+P +HLT
Sbjct: 272 GFTVNHTGYFVAIPRALHLT 291
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,649,677
Number of Sequences: 27780
Number of extensions: 458305
Number of successful extensions: 1449
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1445
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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