Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11b15
(830 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY069432-1|AAL39577.1| 234|Drosophila melanogaster LD14068p pro... 204 1e-52
AE014134-836|AAF52194.1| 234|Drosophila melanogaster CG33113-PE... 204 1e-52
AE014134-835|AAF52197.2| 234|Drosophila melanogaster CG33113-PB... 204 1e-52
BT011111-1|AAR82778.1| 458|Drosophila melanogaster LD43688p pro... 188 6e-48
AE014134-839|AAF52195.1| 222|Drosophila melanogaster CG33113-PA... 167 1e-41
AE014134-834|AAF52199.2| 595|Drosophila melanogaster CG33113-PF... 166 3e-41
AE014134-840|AAF52196.1| 202|Drosophila melanogaster CG33113-PC... 165 7e-41
AE014134-838|AAS64638.1| 224|Drosophila melanogaster CG33113-PG... 165 7e-41
AE014134-837|AAF52198.2| 224|Drosophila melanogaster CG33113-PD... 165 7e-41
U51048-1|AAB01147.1| 158|Drosophila melanogaster tropomyosin-li... 43 6e-04
AE014297-625|AAF54008.1| 154|Drosophila melanogaster CG1279-PA ... 43 6e-04
AE014296-2343|AAF49771.3| 2294|Drosophila melanogaster CG32133-P... 29 5.9
>AY069432-1|AAL39577.1| 234|Drosophila melanogaster LD14068p
protein.
Length = 234
Score = 204 bits (498), Expect = 1e-52
Identities = 101/218 (46%), Positives = 134/218 (61%), Gaps = 5/218 (2%)
Frame = -3
Query: 732 PSLCTILDPHAWFDPQRLHPEVESLIYWRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 553
P +C+ILDP+AWF P+RLHP+VESLIYWR+
Sbjct: 17 PLICSILDPNAWFKPERLHPQVESLIYWRDVKKSGIVFGAGLITLAAISSFSVISVFAYL 76
Query: 552 XXXXXXXXXAFRLYKNVLQAVQKTNDGHPFKWLLEAEVSVSXXXXXXXXXXXXXXXXXXL 373
AFR+YK+V QAVQKTN+GHPFK LE ++++S +
Sbjct: 77 SLLTLFGTVAFRIYKSVTQAVQKTNEGHPFKDYLELDLTLSHEKVQNIAGVAVAHINGFI 136
Query: 372 YELRRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVD 193
ELRRLFLVED++DS+KFGV+LW TYVGA FNG+TL+IL +++LFTLPK YE NK +D
Sbjct: 137 SELRRLFLVEDIIDSIKFGVILWVFTYVGAWFNGMTLVILAFVSLFTLPKVYENNKQSID 196
Query: 192 ANLELARAKINEITAKVRAAVPLGRR-----AEGDKDK 94
+L+L R+K+ EIT K+R A+P+G + AE +KDK
Sbjct: 197 THLDLVRSKLTEITDKIRVAIPIGNKKPEAAAESEKDK 234
>AE014134-836|AAF52194.1| 234|Drosophila melanogaster CG33113-PE,
isoform E protein.
Length = 234
Score = 204 bits (498), Expect = 1e-52
Identities = 101/218 (46%), Positives = 134/218 (61%), Gaps = 5/218 (2%)
Frame = -3
Query: 732 PSLCTILDPHAWFDPQRLHPEVESLIYWRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 553
P +C+ILDP+AWF P+RLHP+VESLIYWR+
Sbjct: 17 PLICSILDPNAWFKPERLHPQVESLIYWRDVKKSGIVFGAGLITLAAISSFSVISVFAYL 76
Query: 552 XXXXXXXXXAFRLYKNVLQAVQKTNDGHPFKWLLEAEVSVSXXXXXXXXXXXXXXXXXXL 373
AFR+YK+V QAVQKTN+GHPFK LE ++++S +
Sbjct: 77 SLLTLFGTVAFRIYKSVTQAVQKTNEGHPFKDYLELDLTLSHEKVQNIAGVAVAHINGFI 136
Query: 372 YELRRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVD 193
ELRRLFLVED++DS+KFGV+LW TYVGA FNG+TL+IL +++LFTLPK YE NK +D
Sbjct: 137 SELRRLFLVEDIIDSIKFGVILWVFTYVGAWFNGMTLVILAFVSLFTLPKVYENNKQSID 196
Query: 192 ANLELARAKINEITAKVRAAVPLGRR-----AEGDKDK 94
+L+L R+K+ EIT K+R A+P+G + AE +KDK
Sbjct: 197 THLDLVRSKLTEITDKIRVAIPIGNKKPEAAAESEKDK 234
>AE014134-835|AAF52197.2| 234|Drosophila melanogaster CG33113-PB,
isoform B protein.
Length = 234
Score = 204 bits (498), Expect = 1e-52
Identities = 101/218 (46%), Positives = 134/218 (61%), Gaps = 5/218 (2%)
Frame = -3
Query: 732 PSLCTILDPHAWFDPQRLHPEVESLIYWRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 553
P +C+ILDP+AWF P+RLHP+VESLIYWR+
Sbjct: 17 PLICSILDPNAWFKPERLHPQVESLIYWRDVKKSGIVFGAGLITLAAISSFSVISVFAYL 76
Query: 552 XXXXXXXXXAFRLYKNVLQAVQKTNDGHPFKWLLEAEVSVSXXXXXXXXXXXXXXXXXXL 373
AFR+YK+V QAVQKTN+GHPFK LE ++++S +
Sbjct: 77 SLLTLFGTVAFRIYKSVTQAVQKTNEGHPFKDYLELDLTLSHEKVQNIAGVAVAHINGFI 136
Query: 372 YELRRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVD 193
ELRRLFLVED++DS+KFGV+LW TYVGA FNG+TL+IL +++LFTLPK YE NK +D
Sbjct: 137 SELRRLFLVEDIIDSIKFGVILWVFTYVGAWFNGMTLVILAFVSLFTLPKVYENNKQSID 196
Query: 192 ANLELARAKINEITAKVRAAVPLGRR-----AEGDKDK 94
+L+L R+K+ EIT K+R A+P+G + AE +KDK
Sbjct: 197 THLDLVRSKLTEITDKIRVAIPIGNKKPEAAAESEKDK 234
>BT011111-1|AAR82778.1| 458|Drosophila melanogaster LD43688p
protein.
Length = 458
Score = 188 bits (459), Expect = 6e-48
Identities = 95/208 (45%), Positives = 125/208 (60%), Gaps = 5/208 (2%)
Frame = -3
Query: 702 AWFDPQRLHPEVESLIYWRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA 523
AWF P+RLHP+VESLIYWR+ A
Sbjct: 251 AWFKPERLHPQVESLIYWRDVKKSGIVFGAGLITLAAISSFSVISVFAYLSLLTLFGTVA 310
Query: 522 FRLYKNVLQAVQKTNDGHPFKWLLEAEVSVSXXXXXXXXXXXXXXXXXXLYELRRLFLVE 343
FR+YK+V QAVQKTN+GHPFK LE ++++S + ELRRLFLVE
Sbjct: 311 FRIYKSVTQAVQKTNEGHPFKDYLELDLTLSHEKVQNIAGVAVAHINGFISELRRLFLVE 370
Query: 342 DLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVDANLELARAKI 163
D++DS+KFGV+LW TYVGA FNG+TL+IL +++LFTLPK YE NK +D +L+L R+K+
Sbjct: 371 DIIDSIKFGVILWVFTYVGAWFNGMTLVILAFVSLFTLPKVYENNKQSIDTHLDLVRSKL 430
Query: 162 NEITAKVRAAVPLGRR-----AEGDKDK 94
EIT K+R A+P+G + AE +KDK
Sbjct: 431 TEITDKIRVAIPIGNKKPEAAAESEKDK 458
>AE014134-839|AAF52195.1| 222|Drosophila melanogaster CG33113-PA,
isoform A protein.
Length = 222
Score = 167 bits (407), Expect = 1e-41
Identities = 89/206 (43%), Positives = 117/206 (56%), Gaps = 5/206 (2%)
Frame = -3
Query: 696 FDPQRLHPEVESLIYWRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFR 517
F P VESLIYWR+ AFR
Sbjct: 17 FQPLPERGPVESLIYWRDVKKSGIVFGAGLITLAAISSFSVISVFAYLSLLTLFGTVAFR 76
Query: 516 LYKNVLQAVQKTNDGHPFKWLLEAEVSVSXXXXXXXXXXXXXXXXXXLYELRRLFLVEDL 337
+YK+V QAVQKTN+GHPFK LE ++++S + ELRRLFLVED+
Sbjct: 77 IYKSVTQAVQKTNEGHPFKDYLELDLTLSHEKVQNIAGVAVAHINGFISELRRLFLVEDI 136
Query: 336 VDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVDANLELARAKINE 157
+DS+KFGV+LW TYVGA FNG+TL+IL +++LFTLPK YE NK +D +L+L R+K+ E
Sbjct: 137 IDSIKFGVILWVFTYVGAWFNGMTLVILAFVSLFTLPKVYENNKQSIDTHLDLVRSKLTE 196
Query: 156 ITAKVRAAVPLGRR-----AEGDKDK 94
IT K+R A+P+G + AE +KDK
Sbjct: 197 ITDKIRVAIPIGNKKPEAAAESEKDK 222
>AE014134-834|AAF52199.2| 595|Drosophila melanogaster CG33113-PF,
isoform F protein.
Length = 595
Score = 166 bits (404), Expect = 3e-41
Identities = 87/197 (44%), Positives = 115/197 (58%), Gaps = 5/197 (2%)
Frame = -3
Query: 669 VESLIYWRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFRLYKNVLQAV 490
VESLIYWR+ AFR+YK+V QAV
Sbjct: 399 VESLIYWRDVKKSGIVFGAGLITLAAISSFSVISVFAYLSLLTLFGTVAFRIYKSVTQAV 458
Query: 489 QKTNDGHPFKWLLEAEVSVSXXXXXXXXXXXXXXXXXXLYELRRLFLVEDLVDSLKFGVL 310
QKTN+GHPFK LE ++++S + ELRRLFLVED++DS+KFGV+
Sbjct: 459 QKTNEGHPFKDYLELDLTLSHEKVQNIAGVAVAHINGFISELRRLFLVEDIIDSIKFGVI 518
Query: 309 LWCLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVDANLELARAKINEITAKVRAAV 130
LW TYVGA FNG+TL+IL +++LFTLPK YE NK +D +L+L R+K+ EIT K+R A+
Sbjct: 519 LWVFTYVGAWFNGMTLVILAFVSLFTLPKVYENNKQSIDTHLDLVRSKLTEITDKIRVAI 578
Query: 129 PLGRR-----AEGDKDK 94
P+G + AE +KDK
Sbjct: 579 PIGNKKPEAAAESEKDK 595
>AE014134-840|AAF52196.1| 202|Drosophila melanogaster CG33113-PC,
isoform C protein.
Length = 202
Score = 165 bits (401), Expect = 7e-41
Identities = 86/197 (43%), Positives = 115/197 (58%), Gaps = 5/197 (2%)
Frame = -3
Query: 669 VESLIYWRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFRLYKNVLQAV 490
+ESLIYWR+ AFR+YK+V QAV
Sbjct: 6 LESLIYWRDVKKSGIVFGAGLITLAAISSFSVISVFAYLSLLTLFGTVAFRIYKSVTQAV 65
Query: 489 QKTNDGHPFKWLLEAEVSVSXXXXXXXXXXXXXXXXXXLYELRRLFLVEDLVDSLKFGVL 310
QKTN+GHPFK LE ++++S + ELRRLFLVED++DS+KFGV+
Sbjct: 66 QKTNEGHPFKDYLELDLTLSHEKVQNIAGVAVAHINGFISELRRLFLVEDIIDSIKFGVI 125
Query: 309 LWCLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVDANLELARAKINEITAKVRAAV 130
LW TYVGA FNG+TL+IL +++LFTLPK YE NK +D +L+L R+K+ EIT K+R A+
Sbjct: 126 LWVFTYVGAWFNGMTLVILAFVSLFTLPKVYENNKQSIDTHLDLVRSKLTEITDKIRVAI 185
Query: 129 PLGRR-----AEGDKDK 94
P+G + AE +KDK
Sbjct: 186 PIGNKKPEAAAESEKDK 202
>AE014134-838|AAS64638.1| 224|Drosophila melanogaster CG33113-PG,
isoform G protein.
Length = 224
Score = 165 bits (401), Expect = 7e-41
Identities = 86/197 (43%), Positives = 115/197 (58%), Gaps = 5/197 (2%)
Frame = -3
Query: 669 VESLIYWRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFRLYKNVLQAV 490
+ESLIYWR+ AFR+YK+V QAV
Sbjct: 28 LESLIYWRDVKKSGIVFGAGLITLAAISSFSVISVFAYLSLLTLFGTVAFRIYKSVTQAV 87
Query: 489 QKTNDGHPFKWLLEAEVSVSXXXXXXXXXXXXXXXXXXLYELRRLFLVEDLVDSLKFGVL 310
QKTN+GHPFK LE ++++S + ELRRLFLVED++DS+KFGV+
Sbjct: 88 QKTNEGHPFKDYLELDLTLSHEKVQNIAGVAVAHINGFISELRRLFLVEDIIDSIKFGVI 147
Query: 309 LWCLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVDANLELARAKINEITAKVRAAV 130
LW TYVGA FNG+TL+IL +++LFTLPK YE NK +D +L+L R+K+ EIT K+R A+
Sbjct: 148 LWVFTYVGAWFNGMTLVILAFVSLFTLPKVYENNKQSIDTHLDLVRSKLTEITDKIRVAI 207
Query: 129 PLGRR-----AEGDKDK 94
P+G + AE +KDK
Sbjct: 208 PIGNKKPEAAAESEKDK 224
>AE014134-837|AAF52198.2| 224|Drosophila melanogaster CG33113-PD,
isoform D protein.
Length = 224
Score = 165 bits (401), Expect = 7e-41
Identities = 86/197 (43%), Positives = 115/197 (58%), Gaps = 5/197 (2%)
Frame = -3
Query: 669 VESLIYWRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFRLYKNVLQAV 490
+ESLIYWR+ AFR+YK+V QAV
Sbjct: 28 LESLIYWRDVKKSGIVFGAGLITLAAISSFSVISVFAYLSLLTLFGTVAFRIYKSVTQAV 87
Query: 489 QKTNDGHPFKWLLEAEVSVSXXXXXXXXXXXXXXXXXXLYELRRLFLVEDLVDSLKFGVL 310
QKTN+GHPFK LE ++++S + ELRRLFLVED++DS+KFGV+
Sbjct: 88 QKTNEGHPFKDYLELDLTLSHEKVQNIAGVAVAHINGFISELRRLFLVEDIIDSIKFGVI 147
Query: 309 LWCLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVDANLELARAKINEITAKVRAAV 130
LW TYVGA FNG+TL+IL +++LFTLPK YE NK +D +L+L R+K+ EIT K+R A+
Sbjct: 148 LWVFTYVGAWFNGMTLVILAFVSLFTLPKVYENNKQSIDTHLDLVRSKLTEITDKIRVAI 207
Query: 129 PLGRR-----AEGDKDK 94
P+G + AE +KDK
Sbjct: 208 PIGNKKPEAAAESEKDK 224
>U51048-1|AAB01147.1| 158|Drosophila melanogaster tropomyosin-like
protein protein.
Length = 158
Score = 42.7 bits (96), Expect = 6e-04
Identities = 21/36 (58%), Positives = 25/36 (69%)
Frame = -3
Query: 357 LFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILG 250
L LVE DSLKF VLL + +G CFNG+TL+I G
Sbjct: 112 LLLVEKWEDSLKFLVLLCGINLLGDCFNGLTLLIFG 147
>AE014297-625|AAF54008.1| 154|Drosophila melanogaster CG1279-PA
protein.
Length = 154
Score = 42.7 bits (96), Expect = 6e-04
Identities = 21/36 (58%), Positives = 25/36 (69%)
Frame = -3
Query: 357 LFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILG 250
L LVE DSLKF VLL + +G CFNG+TL+I G
Sbjct: 108 LLLVEKWEDSLKFLVLLCGINLLGDCFNGLTLLIFG 143
>AE014296-2343|AAF49771.3| 2294|Drosophila melanogaster CG32133-PA
protein.
Length = 2294
Score = 29.5 bits (63), Expect = 5.9
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 271 PVEARPHVREAPQQHAELQRVHQVLHQEQSAQL 369
P + +P +PQQ ++Q Q +HQ+Q QL
Sbjct: 684 PQQPQPQSMMSPQQQQQMQPFQQPVHQQQRMQL 716
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,668,105
Number of Sequences: 53049
Number of extensions: 393424
Number of successful extensions: 2716
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2690
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3942192384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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