Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11b14
(825 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC105606-1|AAI05607.1| 97|Homo sapiens HELLS protein protein. 33 1.3
DQ181928-1|ABA19229.1| 540|Homo sapiens CARDIF protein. 30 8.8
DQ174270-1|AAZ80417.1| 540|Homo sapiens mitochondrial anti-vira... 30 8.8
DQ167126-1|ABA54890.1| 540|Homo sapiens virus-induced signaling... 30 8.8
BX538033-1|CAD97978.1| 822|Homo sapiens hypothetical protein pr... 30 8.8
BC044952-1|AAH44952.1| 540|Homo sapiens virus-induced signaling... 30 8.8
BC016048-1|AAH16048.1| 317|Homo sapiens LRRC38 protein protein. 30 8.8
AL603749-2|CAH70436.1| 294|Homo sapiens leucine rich repeat con... 30 8.8
AL354712-1|CAI21926.1| 294|Homo sapiens leucine rich repeat con... 30 8.8
AL353194-3|CAI11041.1| 540|Homo sapiens novel protein protein. 30 8.8
AL138759-2|CAH70222.1| 192|Homo sapiens helicase, lymphoid-spec... 30 8.8
AL138759-1|CAD13191.1| 838|Homo sapiens helicase, lymphoid-spec... 30 8.8
AL109804-18|CAI18851.1| 540|Homo sapiens novel protein protein. 30 8.8
AF155827-1|AAF82262.1| 838|Homo sapiens proliferation-associate... 30 8.8
AB232371-1|BAE79738.1| 540|Homo sapiens Ips-1 protein. 30 8.8
AB113249-1|BAD24805.1| 782|Homo sapiens lymphoid specific helic... 30 8.8
AB113248-1|BAD24804.1| 809|Homo sapiens lymphoid specific helic... 30 8.8
AB102723-1|BAD10851.1| 884|Homo sapiens lymphoid specific helic... 30 8.8
AB102722-1|BAD10850.1| 315|Homo sapiens lymphoid specific helic... 30 8.8
AB102721-1|BAD10849.1| 740|Homo sapiens lymphoid specific helic... 30 8.8
AB102720-1|BAD10848.1| 345|Homo sapiens lymphoid specific helic... 30 8.8
AB102719-1|BAD10847.1| 708|Homo sapiens lymphoid specific helic... 30 8.8
AB102718-1|BAD10846.1| 806|Homo sapiens lymphoid specific helic... 30 8.8
AB102717-1|BAD10845.1| 129|Homo sapiens lymphoid specific helic... 30 8.8
AB097003-1|BAC77356.1| 540|Homo sapiens putative NFkB activatin... 30 8.8
AB033097-1|BAA86585.1| 542|Homo sapiens KIAA1271 protein protein. 30 8.8
>BC105606-1|AAI05607.1| 97|Homo sapiens HELLS protein protein.
Length = 97
Score = 33.1 bits (72), Expect = 1.3
Identities = 20/69 (28%), Positives = 35/69 (50%)
Frame = -2
Query: 806 MPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYILNVMPVMQD 627
M E++ E A + + K+L K S +S + + + LEK NI Y ++ M+
Sbjct: 30 MLEEEEQLEAAGLERERKMLEKARMSWDRESTEIRYRRLQHLLEKSNI-YSKFLLTKMEQ 88
Query: 626 ERKMSKRKK 600
++K K+KK
Sbjct: 89 QKKKKKKKK 97
>DQ181928-1|ABA19229.1| 540|Homo sapiens CARDIF protein.
Length = 540
Score = 30.3 bits (65), Expect = 8.8
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -2
Query: 176 TVALKLPVAPSTTEYVPTSISGSKKRKNSVPA 81
TVALK+P P++ VP+ + S K +VP+
Sbjct: 307 TVALKVPANPASVSTVPSKLPTSSKPPGAVPS 338
>DQ174270-1|AAZ80417.1| 540|Homo sapiens mitochondrial anti-viral
signaling protein protein.
Length = 540
Score = 30.3 bits (65), Expect = 8.8
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -2
Query: 176 TVALKLPVAPSTTEYVPTSISGSKKRKNSVPA 81
TVALK+P P++ VP+ + S K +VP+
Sbjct: 307 TVALKVPANPASVSTVPSKLPTSSKPPGAVPS 338
>DQ167126-1|ABA54890.1| 540|Homo sapiens virus-induced signaling
adapter protein.
Length = 540
Score = 30.3 bits (65), Expect = 8.8
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -2
Query: 176 TVALKLPVAPSTTEYVPTSISGSKKRKNSVPA 81
TVALK+P P++ VP+ + S K +VP+
Sbjct: 307 TVALKVPANPASVSTVPSKLPTSSKPPGAVPS 338
>BX538033-1|CAD97978.1| 822|Homo sapiens hypothetical protein
protein.
Length = 822
Score = 30.3 bits (65), Expect = 8.8
Identities = 19/76 (25%), Positives = 37/76 (48%)
Frame = -2
Query: 806 MPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYILNVMPVMQD 627
M E++ E A + + K+L K S +S + + + LEK NI Y ++ M+
Sbjct: 14 MLEEEEQLEAAGLERERKMLEKARMSWDRESTEIRYRRLQHLLEKSNI-YSKFLLTKMEQ 72
Query: 626 ERKMSKRKKKVINNNK 579
++ ++KK+ + K
Sbjct: 73 QQLEEQKKKEKLERKK 88
>BC044952-1|AAH44952.1| 540|Homo sapiens virus-induced signaling
adapter protein.
Length = 540
Score = 30.3 bits (65), Expect = 8.8
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -2
Query: 176 TVALKLPVAPSTTEYVPTSISGSKKRKNSVPA 81
TVALK+P P++ VP+ + S K +VP+
Sbjct: 307 TVALKVPANPASVSTVPSKLPTSSKPPGAVPS 338
>BC016048-1|AAH16048.1| 317|Homo sapiens LRRC38 protein protein.
Length = 317
Score = 30.3 bits (65), Expect = 8.8
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +1
Query: 301 SLSRISQLSFNSAKFALVSTAVCLFLLAGIA 393
SL +S+ SF+ +F+L T +C+ + +G+A
Sbjct: 250 SLRELSEASFSECRFSLSLTDLCIIIFSGVA 280
>AL603749-2|CAH70436.1| 294|Homo sapiens leucine rich repeat
containing 38 protein.
Length = 294
Score = 30.3 bits (65), Expect = 8.8
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +1
Query: 301 SLSRISQLSFNSAKFALVSTAVCLFLLAGIA 393
SL +S+ SF+ +F+L T +C+ + +G+A
Sbjct: 227 SLRELSEASFSECRFSLSLTDLCIIIFSGVA 257
>AL354712-1|CAI21926.1| 294|Homo sapiens leucine rich repeat
containing 38 protein.
Length = 294
Score = 30.3 bits (65), Expect = 8.8
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +1
Query: 301 SLSRISQLSFNSAKFALVSTAVCLFLLAGIA 393
SL +S+ SF+ +F+L T +C+ + +G+A
Sbjct: 227 SLRELSEASFSECRFSLSLTDLCIIIFSGVA 257
>AL353194-3|CAI11041.1| 540|Homo sapiens novel protein protein.
Length = 540
Score = 30.3 bits (65), Expect = 8.8
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -2
Query: 176 TVALKLPVAPSTTEYVPTSISGSKKRKNSVPA 81
TVALK+P P++ VP+ + S K +VP+
Sbjct: 307 TVALKVPANPASVSTVPSKLPTSSKPPGAVPS 338
>AL138759-2|CAH70222.1| 192|Homo sapiens helicase,
lymphoid-specific protein.
Length = 192
Score = 30.3 bits (65), Expect = 8.8
Identities = 19/76 (25%), Positives = 37/76 (48%)
Frame = -2
Query: 806 MPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYILNVMPVMQD 627
M E++ E A + + K+L K S +S + + + LEK NI Y ++ M+
Sbjct: 14 MLEEEEQLEAAGLERERKMLEKARMSWDRESTEIRYRRLQHLLEKSNI-YSKFLLTKMEQ 72
Query: 626 ERKMSKRKKKVINNNK 579
++ ++KK+ + K
Sbjct: 73 QQLEEQKKKEKLERKK 88
>AL138759-1|CAD13191.1| 838|Homo sapiens helicase,
lymphoid-specific protein.
Length = 838
Score = 30.3 bits (65), Expect = 8.8
Identities = 19/76 (25%), Positives = 37/76 (48%)
Frame = -2
Query: 806 MPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYILNVMPVMQD 627
M E++ E A + + K+L K S +S + + + LEK NI Y ++ M+
Sbjct: 30 MLEEEEQLEAAGLERERKMLEKARMSWDRESTEIRYRRLQHLLEKSNI-YSKFLLTKMEQ 88
Query: 626 ERKMSKRKKKVINNNK 579
++ ++KK+ + K
Sbjct: 89 QQLEEQKKKEKLERKK 104
>AL109804-18|CAI18851.1| 540|Homo sapiens novel protein protein.
Length = 540
Score = 30.3 bits (65), Expect = 8.8
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -2
Query: 176 TVALKLPVAPSTTEYVPTSISGSKKRKNSVPA 81
TVALK+P P++ VP+ + S K +VP+
Sbjct: 307 TVALKVPANPASVSTVPSKLPTSSKPPGAVPS 338
>AF155827-1|AAF82262.1| 838|Homo sapiens proliferation-associated
SNF2-like protein protein.
Length = 838
Score = 30.3 bits (65), Expect = 8.8
Identities = 19/76 (25%), Positives = 37/76 (48%)
Frame = -2
Query: 806 MPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYILNVMPVMQD 627
M E++ E A + + K+L K S +S + + + LEK NI Y ++ M+
Sbjct: 30 MLEEEEQLEAAGLERERKMLEKARMSWDRESTEIRYRRLQHLLEKSNI-YSKFLLTKMEQ 88
Query: 626 ERKMSKRKKKVINNNK 579
++ ++KK+ + K
Sbjct: 89 QQLEEQKKKEKLERKK 104
>AB232371-1|BAE79738.1| 540|Homo sapiens Ips-1 protein.
Length = 540
Score = 30.3 bits (65), Expect = 8.8
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -2
Query: 176 TVALKLPVAPSTTEYVPTSISGSKKRKNSVPA 81
TVALK+P P++ VP+ + S K +VP+
Sbjct: 307 TVALKVPANPASVSTVPSKLPTSSKPPGAVPS 338
>AB113249-1|BAD24805.1| 782|Homo sapiens lymphoid specific helicase
variant10 protein.
Length = 782
Score = 30.3 bits (65), Expect = 8.8
Identities = 19/76 (25%), Positives = 37/76 (48%)
Frame = -2
Query: 806 MPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYILNVMPVMQD 627
M E++ E A + + K+L K S +S + + + LEK NI Y ++ M+
Sbjct: 30 MLEEEEQLEAAGLERERKMLEKARMSWDRESTEIRYRRLQHLLEKSNI-YSKFLLTKMEQ 88
Query: 626 ERKMSKRKKKVINNNK 579
++ ++KK+ + K
Sbjct: 89 QQLEEQKKKEKLERKK 104
>AB113248-1|BAD24804.1| 809|Homo sapiens lymphoid specific helicase
variant9 protein.
Length = 809
Score = 30.3 bits (65), Expect = 8.8
Identities = 19/76 (25%), Positives = 37/76 (48%)
Frame = -2
Query: 806 MPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYILNVMPVMQD 627
M E++ E A + + K+L K S +S + + + LEK NI Y ++ M+
Sbjct: 30 MLEEEEQLEAAGLERERKMLEKARMSWDRESTEIRYRRLQHLLEKSNI-YSKFLLTKMEQ 88
Query: 626 ERKMSKRKKKVINNNK 579
++ ++KK+ + K
Sbjct: 89 QQLEEQKKKEKLERKK 104
>AB102723-1|BAD10851.1| 884|Homo sapiens lymphoid specific helicase
variant8 protein.
Length = 884
Score = 30.3 bits (65), Expect = 8.8
Identities = 19/76 (25%), Positives = 37/76 (48%)
Frame = -2
Query: 806 MPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYILNVMPVMQD 627
M E++ E A + + K+L K S +S + + + LEK NI Y ++ M+
Sbjct: 30 MLEEEEQLEAAGLERERKMLEKARMSWDRESTEIRYRRLQHLLEKSNI-YSKFLLTKMEQ 88
Query: 626 ERKMSKRKKKVINNNK 579
++ ++KK+ + K
Sbjct: 89 QQLEEQKKKEKLERKK 104
>AB102722-1|BAD10850.1| 315|Homo sapiens lymphoid specific helicase
variant7 protein.
Length = 315
Score = 30.3 bits (65), Expect = 8.8
Identities = 19/76 (25%), Positives = 37/76 (48%)
Frame = -2
Query: 806 MPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYILNVMPVMQD 627
M E++ E A + + K+L K S +S + + + LEK NI Y ++ M+
Sbjct: 30 MLEEEEQLEAAGLERERKMLEKARMSWDRESTEIRYRRLQHLLEKSNI-YSKFLLTKMEQ 88
Query: 626 ERKMSKRKKKVINNNK 579
++ ++KK+ + K
Sbjct: 89 QQLEEQKKKEKLERKK 104
>AB102721-1|BAD10849.1| 740|Homo sapiens lymphoid specific helicase
variant6 protein.
Length = 740
Score = 30.3 bits (65), Expect = 8.8
Identities = 19/76 (25%), Positives = 37/76 (48%)
Frame = -2
Query: 806 MPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYILNVMPVMQD 627
M E++ E A + + K+L K S +S + + + LEK NI Y ++ M+
Sbjct: 30 MLEEEEQLEAAGLERERKMLEKARMSWDRESTEIRYRRLQHLLEKSNI-YSKFLLTKMEQ 88
Query: 626 ERKMSKRKKKVINNNK 579
++ ++KK+ + K
Sbjct: 89 QQLEEQKKKEKLERKK 104
>AB102720-1|BAD10848.1| 345|Homo sapiens lymphoid specific helicase
variant5 protein.
Length = 345
Score = 30.3 bits (65), Expect = 8.8
Identities = 19/76 (25%), Positives = 37/76 (48%)
Frame = -2
Query: 806 MPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYILNVMPVMQD 627
M E++ E A + + K+L K S +S + + + LEK NI Y ++ M+
Sbjct: 30 MLEEEEQLEAAGLERERKMLEKARMSWDRESTEIRYRRLQHLLEKSNI-YSKFLLTKMEQ 88
Query: 626 ERKMSKRKKKVINNNK 579
++ ++KK+ + K
Sbjct: 89 QQLEEQKKKEKLERKK 104
>AB102719-1|BAD10847.1| 708|Homo sapiens lymphoid specific helicase
variant4 protein.
Length = 708
Score = 30.3 bits (65), Expect = 8.8
Identities = 19/76 (25%), Positives = 37/76 (48%)
Frame = -2
Query: 806 MPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYILNVMPVMQD 627
M E++ E A + + K+L K S +S + + + LEK NI Y ++ M+
Sbjct: 30 MLEEEEQLEAAGLERERKMLEKARMSWDRESTEIRYRRLQHLLEKSNI-YSKFLLTKMEQ 88
Query: 626 ERKMSKRKKKVINNNK 579
++ ++KK+ + K
Sbjct: 89 QQLEEQKKKEKLERKK 104
>AB102718-1|BAD10846.1| 806|Homo sapiens lymphoid specific helicase
variant3 protein.
Length = 806
Score = 30.3 bits (65), Expect = 8.8
Identities = 19/76 (25%), Positives = 37/76 (48%)
Frame = -2
Query: 806 MPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYILNVMPVMQD 627
M E++ E A + + K+L K S +S + + + LEK NI Y ++ M+
Sbjct: 30 MLEEEEQLEAAGLERERKMLEKARMSWDRESTEIRYRRLQHLLEKSNI-YSKFLLTKMEQ 88
Query: 626 ERKMSKRKKKVINNNK 579
++ ++KK+ + K
Sbjct: 89 QQLEEQKKKEKLERKK 104
>AB102717-1|BAD10845.1| 129|Homo sapiens lymphoid specific helicase
variant2 protein.
Length = 129
Score = 30.3 bits (65), Expect = 8.8
Identities = 19/76 (25%), Positives = 37/76 (48%)
Frame = -2
Query: 806 MPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYILNVMPVMQD 627
M E++ E A + + K+L K S +S + + + LEK NI Y ++ M+
Sbjct: 30 MLEEEEQLEAAGLERERKMLEKARMSWDRESTEIRYRRLQHLLEKSNI-YSKFLLTKMEQ 88
Query: 626 ERKMSKRKKKVINNNK 579
++ ++KK+ + K
Sbjct: 89 QQLEEQKKKEKLERKK 104
>AB097003-1|BAC77356.1| 540|Homo sapiens putative NFkB activating
protein protein.
Length = 540
Score = 30.3 bits (65), Expect = 8.8
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -2
Query: 176 TVALKLPVAPSTTEYVPTSISGSKKRKNSVPA 81
TVALK+P P++ VP+ + S K +VP+
Sbjct: 307 TVALKVPANPASVSTVPSKLPTSSKPPGAVPS 338
>AB033097-1|BAA86585.1| 542|Homo sapiens KIAA1271 protein protein.
Length = 542
Score = 30.3 bits (65), Expect = 8.8
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -2
Query: 176 TVALKLPVAPSTTEYVPTSISGSKKRKNSVPA 81
TVALK+P P++ VP+ + S K +VP+
Sbjct: 309 TVALKVPANPASVSTVPSKLPTSSKPPGAVPS 340
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,727,007
Number of Sequences: 237096
Number of extensions: 2471225
Number of successful extensions: 5434
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 5215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5432
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10315140830
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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