Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11b13
         (886 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    27   3.6  
SPCC736.09c |||TRAX |Schizosaccharomyces pombe|chr 3|||Manual          27   3.6  
SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces...    27   4.7  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    27   4.7  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    26   8.2  

>SPBC1826.01c |mot1||TATA-binding protein associated factor
           Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -3

Query: 197 MLFLSLLPLTAFRRPYP 147
           ML +S+ P+ +FRRPYP
Sbjct: 704 MLKVSITPIGSFRRPYP 720


>SPCC736.09c |||TRAX |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 231

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 734 ACEDSSFRADVNIIKEM*RMTLITGTVCKIYCTIG 630
           +C+DSSFR  +N I  +  +  +TG + +   T G
Sbjct: 112 SCKDSSFRISINFIDYVLGVCDMTGEIMRFLVTNG 146


>SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = -2

Query: 681 TNDVNNGYRLQNILY--NWFCNCKYCKYFAC 595
           +N  N GY  +N+ Y  + F N  +C+YF C
Sbjct: 310 SNIRNVGYEKKNLYYISSAFSNLLHCRYFNC 340


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2244

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 585  ITVHKQNIYNICSYKTNCTIYFADGTR 665
            I V +Q + ++C  K  CT++F   TR
Sbjct: 1962 IIVERQGVIDLCYGKLLCTMFFEPSTR 1988


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -3

Query: 443 ILVSFLKT*NGIINSFKNRLFDYYFSKLTCMNEICXL*NHNSSLKYF 303
           + ++ LK    ++   + R+ D Y   L C N+I     HN SL YF
Sbjct: 535 LYINALKVFPCLMGKLEQRVIDAYVKCLNCSNKIIHTVCHN-SLIYF 580


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,392,085
Number of Sequences: 5004
Number of extensions: 68088
Number of successful extensions: 161
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)