Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11b13
         (886 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1145 - 24674319-24674403,24674691-24674746,24674885-246749...    35   0.100

>08_02_1145 -
           24674319-24674403,24674691-24674746,24674885-24674965,
           24675063-24675137,24675418-24675479,24675857-24675950,
           24676674-24676762,24676864-24677194
          Length = 290

 Score = 34.7 bits (76), Expect = 0.100
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -2

Query: 846 NDVALMTYLGTITKGCNAINQLVNRFNVLYD 754
           ND  LMTYL   T   + +N+LV +FN  Y+
Sbjct: 247 NDTLLMTYLAMFTNCSSTMNELVEKFNATYE 277


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,058,931
Number of Sequences: 37544
Number of extensions: 338716
Number of successful extensions: 631
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)