Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11b13
         (886 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY070607-1|AAL48078.1|  341|Drosophila melanogaster RE71054p pro...    65   1e-10
AE014297-3186|AAF56022.1|  341|Drosophila melanogaster CG6932-PA...    65   1e-10

>AY070607-1|AAL48078.1|  341|Drosophila melanogaster RE71054p
           protein.
          Length = 341

 Score = 65.3 bits (152), Expect = 1e-10
 Identities = 25/40 (62%), Positives = 33/40 (82%)
 Frame = -2

Query: 873 FRTHFYNQCNDVALMTYLGTITKGCNAINQLVNRFNVLYD 754
           F+  FY QCNDV L++YLGT+TKGCN ++  VN+FN+LYD
Sbjct: 289 FQEEFYTQCNDVGLISYLGTLTKGCNDMHHFVNKFNMLYD 328


>AE014297-3186|AAF56022.1|  341|Drosophila melanogaster CG6932-PA
           protein.
          Length = 341

 Score = 65.3 bits (152), Expect = 1e-10
 Identities = 25/40 (62%), Positives = 33/40 (82%)
 Frame = -2

Query: 873 FRTHFYNQCNDVALMTYLGTITKGCNAINQLVNRFNVLYD 754
           F+  FY QCNDV L++YLGT+TKGCN ++  VN+FN+LYD
Sbjct: 289 FQEEFYTQCNDVGLISYLGTLTKGCNDMHHFVNKFNMLYD 328


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,542,997
Number of Sequences: 53049
Number of extensions: 626704
Number of successful extensions: 1133
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1132
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4311772920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)