Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11b13
         (886 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006730-11|ABO16462.1|  327|Caenorhabditis elegans Hypothetical...    29   5.8  
Z77667-6|CAB01235.2|  870|Caenorhabditis elegans Hypothetical pr...    28   7.7  
AF416567-1|AAL27004.1|  870|Caenorhabditis elegans nuclear zinc ...    28   7.7  
AF098993-2|AAC67466.1|  549|Caenorhabditis elegans Hypothetical ...    28   7.7  

>AC006730-11|ABO16462.1|  327|Caenorhabditis elegans Hypothetical
           protein Y27F2A.11 protein.
          Length = 327

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = +1

Query: 601 KIFTIFAVTKPIVQYILQTVPVINVIRYISFMILTSALKEESSH 732
           KIF I+A+T   + +I+ ++ ++N+IR +S + L  +      H
Sbjct: 209 KIFIIYAITGGSIGFIVFSLVLLNIIRMLSQLRLKISKSNYQKH 252


>Z77667-6|CAB01235.2|  870|Caenorhabditis elegans Hypothetical
           protein M04B2.1 protein.
          Length = 870

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = +3

Query: 579 IIITVHKQNIYNICSYKTNCTIYFADGTRY*RHSLHFFYDINVRPKRRVLACAFPCPVC 755
           ++++ HK+N++   S K  CT+     T   R   H+F    V  K       +PC +C
Sbjct: 434 LVMSTHKENLHFTGS-KFQCTMCKETDTSEQRMKDHYFETHLVIAKSEEKESKYPCAIC 491


>AF416567-1|AAL27004.1|  870|Caenorhabditis elegans nuclear zinc
           finger protein protein.
          Length = 870

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = +3

Query: 579 IIITVHKQNIYNICSYKTNCTIYFADGTRY*RHSLHFFYDINVRPKRRVLACAFPCPVC 755
           ++++ HK+N++   S K  CT+     T   R   H+F    V  K       +PC +C
Sbjct: 434 LVMSTHKENLHFTGS-KFQCTMCKETDTSEQRMKDHYFETHLVIAKSEEKESKYPCAIC 491


>AF098993-2|AAC67466.1|  549|Caenorhabditis elegans Hypothetical
           protein T10B11.2 protein.
          Length = 549

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 702 NVRPKRRVLACAFPCPVCRR 761
           NV PK ++  C  PCPVC +
Sbjct: 376 NVNPKDQLPPCLEPCPVCMK 395


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,358,568
Number of Sequences: 27780
Number of extensions: 367340
Number of successful extensions: 790
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)