Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11b13
         (886 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    23   3.7  
DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse tr...    23   4.9  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   8.6  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 236 ISKYF*IRRKINNLLLGIELVEKNI 310
           I+K   IR  I++ LLG +LVE  I
Sbjct: 408 INKIIPIRMSIHDELLGADLVEHRI 432


>DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 42

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 339 TYFVHTCKFRKIIIKKS 389
           TYF   C   KI+IKK+
Sbjct: 16  TYFQQYCLHHKILIKKN 32


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -2

Query: 294 NSIPSNKLFIFLLI*KYFDITSTCKRSQGKYLYVIFILI 178
           N + S  +F FLLI +    TS      GKYL    IL+
Sbjct: 272 NILLSQTMF-FLLISEIIPSTSLALPLLGKYLLFTMILV 309


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,963
Number of Sequences: 438
Number of extensions: 4849
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)