Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11b12
(532 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2... 31 0.14
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 27 1.7
SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter M... 27 1.7
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 27 2.3
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 26 4.0
SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 25 5.3
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 25 5.3
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 25 5.3
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 25 5.3
SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces pomb... 25 7.0
>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
Mei2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 750
Score = 30.7 bits (66), Expect = 0.14
Identities = 17/69 (24%), Positives = 27/69 (39%)
Frame = -1
Query: 238 NAQTSSQGPNRSAATAHTLGCGRPTITLLAPNARYEKSGITWLALTQHMHNLNAGHYTAR 59
++ T S G RS C PT A ++ + L+ + +LN YT
Sbjct: 514 DSPTGSLGMRRSLTVGANASCSNPTNLSFASLTLHDSKADSTLSASSLNPDLNLQRYTPT 573
Query: 58 THRHKAHRN 32
+H + RN
Sbjct: 574 VEKHASDRN 582
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 27.1 bits (57), Expect = 1.7
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = -3
Query: 338 IQCTRCLAFGHGRKFCTESVDRCSHCGG-PHLREKCADFIAGTEPQCCNCSHSG 180
+ C C ++GH + CT V +C CG H +C A C C+ G
Sbjct: 116 MNCYACGSYGHQARDCTMGV-KCYSCGKIGHRSFECQQ--ASDGQLCYKCNQPG 166
>SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter
Mfs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 531
Score = 27.1 bits (57), Expect = 1.7
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +3
Query: 414 YHGTNLDNDVRRFGIFCPLLELYGHFFIFLRQV--PKYI 524
YH T ++N + GI + +FI+LR+V PK++
Sbjct: 349 YHFTTIENGLVYMGILVGSVLTVAFYFIYLRKVMIPKFV 387
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 26.6 bits (56), Expect = 2.3
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -2
Query: 315 IWTWSKILHRECGQMQSLWRTASAREMRRLHRRDRTAVLQ 196
IW+ S RE Q++ W + S E R L + ++ AVLQ
Sbjct: 250 IWSSSNTEERE--QIREFWLSLSESERRSLVKVEKEAVLQ 287
>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1689
Score = 25.8 bits (54), Expect = 4.0
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 105 SASQVIPLFSYRAFGAKSVMVGLPQPR 185
S + F + FGAK+V +G+P+ R
Sbjct: 1206 STQMTLNTFHFAGFGAKNVTLGIPRLR 1232
>SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 244
Score = 25.4 bits (53), Expect = 5.3
Identities = 13/44 (29%), Positives = 18/44 (40%)
Frame = -1
Query: 277 TDAVTVEDRICARNAQTSSQGPNRSAATAHTLGCGRPTITLLAP 146
TD + V + + N SQ P+ A T + L C L P
Sbjct: 20 TDWIDVIETMRETNESPKSQNPSEEATTVNELSCEAKPKLLFTP 63
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 25.4 bits (53), Expect = 5.3
Identities = 29/132 (21%), Positives = 54/132 (40%), Gaps = 11/132 (8%)
Frame = -1
Query: 379 WTCKGSESRTSLRSSNA---RGASHLDMVENFAPRVWTDAVTVEDRICARNAQTSSQGPN 209
W KG +++++ S N+ + + ++ R+ +A+ + A TSS+ N
Sbjct: 49 WWSKGRTTQSAINSENSDKEKYKKEILEIKEREQRMLAEALGLPQPSAL--ALTSSKAAN 106
Query: 208 RSAAT--------AHTLGCGRPTITLLAPNARYEKSGITWLALTQHMHNLNAGHYTARTH 53
RS+ AH+ R T +P R+ + + H H + H RTH
Sbjct: 107 RSSTNTEKDSRSIAHSTSRSRST----SPANRHRRKEKE-RTRSNHRHGSHRRHEPYRTH 161
Query: 52 RHKAHRNKNTTH 17
+ HR+ T +
Sbjct: 162 LSRHHRHSTTNY 173
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1066
Score = 25.4 bits (53), Expect = 5.3
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = -1
Query: 220 QGPNRSAATAHTLGCGRPTITLLAPNARYEKSGITWLALTQHMHNL 83
Q P+ + ++ + P++T + TWL L QHMH L
Sbjct: 19 QDPSDAQSSPTFVPSANPSLTTPWLQTTPSANRPTWLPLQQHMHQL 64
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 25.4 bits (53), Expect = 5.3
Identities = 11/35 (31%), Positives = 12/35 (34%)
Frame = -3
Query: 296 FCTESVDRCSHCGGPHLREKCADFIAGTEPQCCNC 192
FC VD C+ C P P C NC
Sbjct: 74 FCKLCVDICNGCSTPICEFNAVSNSQANHPCCSNC 108
>SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 504
Score = 25.0 bits (52), Expect = 7.0
Identities = 7/37 (18%), Positives = 22/37 (59%)
Frame = -1
Query: 139 RYEKSGITWLALTQHMHNLNAGHYTARTHRHKAHRNK 29
+Y+ + + +++ MH+++A H + + K +++K
Sbjct: 340 QYDPNSLLYISKAMDMHDMSASHQRSLSENRKKNQHK 376
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,172,511
Number of Sequences: 5004
Number of extensions: 45972
Number of successful extensions: 158
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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