Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11b12
(532 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0886 - 7356591-7356662,7357002-7357079,7357373-7357444,735... 30 1.0
09_06_0087 + 20771329-20771450,20771462-20771771,20771893-207726... 30 1.3
03_02_0097 + 5602912-5603293,5604599-5604676,5604935-5604963 29 1.8
09_04_0347 + 16887182-16888504 29 2.3
05_05_0315 - 24030695-24030787,24030896-24030995,24031120-240312... 29 2.3
05_03_0201 - 9762563-9762843,9763037-9763919,9763988-9764036,980... 29 2.3
10_01_0140 - 1674305-1674586,1674683-1674838,1675676-1676622,167... 29 3.1
06_03_0046 - 15852653-15854560 29 3.1
05_01_0400 - 3159370-3159385,3159599-3159703,3159972-3160006,316... 29 3.1
04_04_0095 - 22775340-22776017 29 3.1
11_06_0611 + 25461469-25461655,25461670-25462238 28 4.1
10_05_0020 - 8094412-8094653,8094692-8095017,8095632-8095798 28 4.1
08_02_1323 - 26136015-26137876,26138300-26139229,26139922-261400... 28 4.1
05_06_0155 - 26028923-26030263 28 4.1
03_03_0117 - 14583102-14583186,14585202-14585336,14585440-145856... 28 4.1
11_01_0219 - 1710206-1710246,1710479-1710620,1710699-1710752,171... 28 5.4
10_05_0023 + 8171023-8171782,8172658-8172950 28 5.4
03_05_0589 + 25919965-25920331,25920461-25920780 28 5.4
02_02_0680 - 12884555-12884767,12884824-12884912,12885259-12885376 28 5.4
01_06_1374 + 36740860-36741365,36742529-36743003,36743084-36743890 28 5.4
10_02_0188 - 6473353-6473432,6473619-6474816 27 7.1
09_02_0546 - 10454404-10455687 27 7.1
06_03_1283 - 28957729-28959258,28959354-28959550,28959824-289600... 27 7.1
04_04_0460 - 25378860-25379409,25379515-25379644,25380733-25380898 27 7.1
02_01_0451 - 3237849-3238061,3238142-3238268,3238418-3238656,323... 27 7.1
10_08_0153 - 15240707-15241019,15241269-15241723 27 9.4
03_05_0056 - 20349217-20349484,20349563-20350032,20350049-203504... 27 9.4
>07_01_0886 -
7356591-7356662,7357002-7357079,7357373-7357444,
7357511-7357600,7357669-7357783,7358509-7358639,
7358717-7358992,7360147-7360283,7360368-7360502,
7360958-7361325,7362111-7362229,7362295-7362339
Length = 545
Score = 30.3 bits (65), Expect = 1.0
Identities = 27/88 (30%), Positives = 38/88 (43%)
Frame = -1
Query: 400 RRLGPSTWTCKGSESRTSLRSSNARGASHLDMVENFAPRVWTDAVTVEDRICARNAQTSS 221
RR+ S C G + T+ SS+ R + L + + + R T AV E A ++
Sbjct: 35 RRIPRSRRLCTGCITTTA--SSSRRSSVPLPLPDPSSSRSETSAVRSEGD--AAEEKSEE 90
Query: 220 QGPNRSAATAHTLGCGRPTITLLAPNAR 137
Q P R G RPTI LL A+
Sbjct: 91 QRPGRRRRKRKQRGPTRPTIALLTEEAK 118
>09_06_0087 +
20771329-20771450,20771462-20771771,20771893-20772672,
20772854-20774002
Length = 786
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = -3
Query: 335 QCTRCLAFGHGRKFCTESVDRCSHCGGP-HLREKCADFIAGTEPQ 204
+C RCL GH + C++ C C P H+ C I T P+
Sbjct: 70 RCFRCLGLGHLKASCSQP-PTCYRCWYPGHIERNCKVDIDATLPR 113
>03_02_0097 + 5602912-5603293,5604599-5604676,5604935-5604963
Length = 162
Score = 29.5 bits (63), Expect = 1.8
Identities = 19/66 (28%), Positives = 31/66 (46%)
Frame = -1
Query: 346 LRSSNARGASHLDMVENFAPRVWTDAVTVEDRICARNAQTSSQGPNRSAATAHTLGCGRP 167
LR++ +R H +E P V D+ C R +S+ P+R + + HTL G+
Sbjct: 43 LRAALSRSPRHPSPLEPIPPPVHRRTPHHSDQ-CRRRTPSSAHRPDRHSPSPHTLVLGQM 101
Query: 166 TITLLA 149
T +A
Sbjct: 102 GTTAVA 107
>09_04_0347 + 16887182-16888504
Length = 440
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Frame = -2
Query: 429 GWSRGMAEDDGGWGPLPGPAKDQSRG----PVSAHPMHEVPR 316
G G DDG PLP P ++ P+S+ PM PR
Sbjct: 123 GAGAGADSDDGNTSPLPPPRPSRAEAAAIKPISSRPMDPPPR 164
>05_05_0315 -
24030695-24030787,24030896-24030995,24031120-24031247,
24031350-24031517,24031626-24031741,24031773-24031896,
24032085-24032254,24032255-24032999
Length = 547
Score = 29.1 bits (62), Expect = 2.3
Identities = 22/65 (33%), Positives = 26/65 (40%), Gaps = 3/65 (4%)
Frame = -2
Query: 471 EEDKKSQNGARHCPGWSRGMAEDDGGWGP--LPGPAKDQSR-GPVSAHPMHEVPRIWTWS 301
E D + P S G A P P PAK + GPV PM +V I+T
Sbjct: 12 EPDPPPASSGSSRPAGSAGAAASPATISPSAAPAPAKPPAPIGPVLGRPMEDVKSIYTVG 71
Query: 300 KILHR 286
K L R
Sbjct: 72 KELGR 76
>05_03_0201 -
9762563-9762843,9763037-9763919,9763988-9764036,
9806710-9807680
Length = 727
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = -3
Query: 356 EDQSPLIQCTRCLAFGHGRKFCTESVDRCSHCGGPHLREKC 234
ED+ C+RC GH C + C HC H ++C
Sbjct: 185 EDEMERKACSRCGEIGHVASSCATT---CVHCEEDHPSDRC 222
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = -3
Query: 356 EDQSPLIQCTRCLAFGHGRKFCTESVDRCSHCGGPHLREKC 234
E++ CTRC GH C + C+HC H +C
Sbjct: 586 EEEMESKACTRCGEIGHVASMC---LTLCTHCEEDHPPGEC 623
>10_01_0140 -
1674305-1674586,1674683-1674838,1675676-1676622,
1678976-1679054,1679168-1679207,1679580-1679767,
1679869-1680024,1680752-1681713,1681866-1681914
Length = 952
Score = 28.7 bits (61), Expect = 3.1
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Frame = -2
Query: 441 RHCPGWSRGMAEDDGGWGPLPGPAKDQSRGPVSAHPMHEVPRIWTW--SKILHREC---G 277
R G S M E G GP PA+D R +S P + RI ++ S+ R C
Sbjct: 503 RRLSGCSAAMEEPPGKKGPAMDPAQDSGRDWLSGLPEGVLHRIMSFLDSRQAVRTCVLSR 562
Query: 276 QMQSLWRT 253
+ + LWR+
Sbjct: 563 RWRDLWRS 570
>06_03_0046 - 15852653-15854560
Length = 635
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = -3
Query: 341 LIQCTRCLAFGHGRKFCTESVDRCSHC-GGPHLREKCA 231
++ CTRCL GH C+E V C C H+ CA
Sbjct: 226 MLSCTRCLDKGHIASDCSEPV-WCHSCLEAGHMARFCA 262
>05_01_0400 -
3159370-3159385,3159599-3159703,3159972-3160006,
3160134-3160272,3160457-3160605,3161052-3161173,
3161296-3161417,3161779-3162033,3162108-3162271,
3162311-3162489,3162593-3162767,3162916-3163002,
3163144-3163446,3163539-3163594,3163813-3163894,
3163972-3164039,3164779-3164835,3164926-3164991,
3165121-3165192,3167363-3167459
Length = 782
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +3
Query: 303 TMSKCEAPRALDERRLVLDSDPLQVQVEGPSLRHPL 410
T+S+ + + DE R +L QVQ + +LRHPL
Sbjct: 212 TLSRTDKLESPDEAREILKFARAQVQKQAANLRHPL 247
>04_04_0095 - 22775340-22776017
Length = 225
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = -3
Query: 398 EAGALYLDLQRIRVEDQSPLIQCTRCLAFGHGRKFCTESVDRCSHCG 258
+A L ++++ I D ++ TR L G +C +RC+ CG
Sbjct: 163 KAPKLLVEVRMIHAADNYGAVKATRSLG-GVNHHYCCSDGERCAQCG 208
>11_06_0611 + 25461469-25461655,25461670-25462238
Length = 251
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -2
Query: 426 WSRGMAEDDGGWGPLPGPAKDQSRGPVSA 340
WS G D GGWG A+ + PV A
Sbjct: 16 WSGGEGVDTGGWGMEAAVARSTYQNPVEA 44
>10_05_0020 - 8094412-8094653,8094692-8095017,8095632-8095798
Length = 244
Score = 28.3 bits (60), Expect = 4.1
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -2
Query: 492 RNDHKVQEEDKKSQNGARHCPGWS 421
R D + Q++D +++ A CPGW+
Sbjct: 177 RTDDEDQDDDDRAEATAARCPGWA 200
>08_02_1323 -
26136015-26137876,26138300-26139229,26139922-26140068,
26140139-26140360,26140513-26140555
Length = 1067
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = +3
Query: 216 PCDEVCAFLAQMRSSTVTASVHTLGAKFSTMSKCEAPRALDERRLVLDSD 365
PC+E ++ M S V + T+G +S E P+A++E RLV DS+
Sbjct: 293 PCEET---VSSMEQSEV---MFTIGNNEDDLSCVERPKAVEEDRLVNDSN 336
>05_06_0155 - 26028923-26030263
Length = 446
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = +3
Query: 60 RAV*CPAFRLCICCVSASQVIPLFSYRAFGAKSVMVGLPQPRV*AVAALRFG 215
RAV F C V+A +P + ++ GA + VGL P V A FG
Sbjct: 80 RAVVFDMFCACALDVAAELGLPAYFFQCGGASHLAVGLHLPHVQAEINASFG 131
>03_03_0117 -
14583102-14583186,14585202-14585336,14585440-14585604,
14586168-14586245,14586796-14586941
Length = 202
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +1
Query: 292 QNFRPCPNARHLVHWMSGDWSSTLILCRSR*RAP 393
+++ P P +H +GD +ILCR R P
Sbjct: 162 RSYSPAPKRKHYSSCFAGDTDKFMILCRKSVRMP 195
>11_01_0219 -
1710206-1710246,1710479-1710620,1710699-1710752,
1710838-1710909,1711631-1711699,1711807-1711848,
1711946-1712014,1712130-1712267,1712390-1712500,
1712576-1712726,1713720-1713775,1714076-1714753
Length = 540
Score = 27.9 bits (59), Expect = 5.4
Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -1
Query: 394 LGPSTWTCKGSESRTSLRSSNARGASHLDMVENFAPR-VWTDAVT 263
L PSTWT +G E S R N+ LD N P V T+ VT
Sbjct: 322 LEPSTWTMQG-EVNASSRPKNSALEVDLDFEHNVRPAPVITEEVT 365
>10_05_0023 + 8171023-8171782,8172658-8172950
Length = 350
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = -3
Query: 356 EDQSPLIQCTRCLAFGHGRKFCTESVDRCSHCGGPHLREKC 234
E++ CTRC GH C + C+HC H +C
Sbjct: 205 EEEMESKACTRCGEIGHVASMC---LTLCTHCEEDHPPGEC 242
>03_05_0589 + 25919965-25920331,25920461-25920780
Length = 228
Score = 27.9 bits (59), Expect = 5.4
Identities = 19/62 (30%), Positives = 26/62 (41%)
Frame = +3
Query: 141 AFGAKSVMVGLPQPRV*AVAALRFGPCDEVCAFLAQMRSSTVTASVHTLGAKFSTMSKCE 320
A G + +G Q V V L PCD+V A ++ RS+T A M+
Sbjct: 95 AAGPFGLFLGQAQAIVPNVCNLPSNPCDDVAAKSSEPRSATPAALAPAAAPDTPAMTPSA 154
Query: 321 AP 326
AP
Sbjct: 155 AP 156
>02_02_0680 - 12884555-12884767,12884824-12884912,12885259-12885376
Length = 139
Score = 27.9 bits (59), Expect = 5.4
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -2
Query: 405 DDGGWGPLPGPAKDQSRGPVSAHPMHE 325
+D GW P PA+++ R + P HE
Sbjct: 31 EDAGWQIRPAPAQEKHRSSRAGEPPHE 57
>01_06_1374 + 36740860-36741365,36742529-36743003,36743084-36743890
Length = 595
Score = 27.9 bits (59), Expect = 5.4
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Frame = -2
Query: 312 WTWSKILHRECGQMQSLW-RTASAREMRRLHRRDRTAVLQLLTLWVAEGRP*RF*RRMPD 136
W + LH G ++ R A++R RR HR D + + RP R R P
Sbjct: 20 WVPDEALHLVMGHVEDPRDREAASRVCRRWHRIDALTRKHVTVAFCYAARPARLRERFPR 79
Query: 135 TKKVGLLG 112
+ + L G
Sbjct: 80 LESLSLKG 87
>10_02_0188 - 6473353-6473432,6473619-6474816
Length = 425
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/41 (31%), Positives = 17/41 (41%)
Frame = -3
Query: 356 EDQSPLIQCTRCLAFGHGRKFCTESVDRCSHCGGPHLREKC 234
ED+ C+RC GH C C HC H ++C
Sbjct: 185 EDEMERKACSRCGEIGHVASSCATI---CVHCEEDHPPDRC 222
>09_02_0546 - 10454404-10455687
Length = 427
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = -3
Query: 356 EDQSPLIQCTRCLAFGHGRKFCTESVDRCSHCGGPHLREKC 234
+++ L C+RC GH C + C HC H ++C
Sbjct: 195 QNKIELKACSRCGEIGHVASSCAST---CVHCEEDHPPDRC 232
>06_03_1283 -
28957729-28959258,28959354-28959550,28959824-28960026,
28960097-28960424,28960524-28960661,28960765-28961020,
28961529-28961626,28963104-28963367,28964395-28964584
Length = 1067
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -3
Query: 242 EKCADFIAGTEPQCCNCSHSGLRKADHNAFSAEC 141
+KCA G+ +CC+ SH G ++ S C
Sbjct: 705 KKCAASHHGSPKKCCSSSHHGSHAKKNHGVSHHC 738
>04_04_0460 - 25378860-25379409,25379515-25379644,25380733-25380898
Length = 281
Score = 27.5 bits (58), Expect = 7.1
Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 5/88 (5%)
Frame = -2
Query: 429 GWSRGMAEDDGGWGPLPGPAKDQSRGPVSAHPMHEVPRIW-TWSKI--LHRECGQMQSLW 259
GW R + +D GGW GP Q + H W + SK+ L R + W
Sbjct: 11 GWGRQLQQDGGGW--RKGPWTSQEDALLVEHVRQHGEGRWNSVSKLTGLKRSGKSCRLRW 68
Query: 258 RTASAREMRR--LHRRDRTAVLQLLTLW 181
+++R + ++ + ++QL LW
Sbjct: 69 VNYLRPDLKRGKITPQEESIIVQLHALW 96
>02_01_0451 -
3237849-3238061,3238142-3238268,3238418-3238656,
3238937-3239151,3239569-3240031,3240562-3240715,
3241724-3241833,3242540-3242797,3242843-3242854,
3243492-3243545,3244202-3244312,3244390-3244545,
3244798-3245201,3245405-3245501,3246041-3246050,
3246097-3246164,3246652-3246762,3246874-3247074,
3247384-3247485,3247980-3248087,3248209-3248411,
3248563-3248680,3248774-3248854,3248958-3249500,
3249602-3249730
Length = 1428
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = -2
Query: 399 GGWGP-LPGPAKDQSRGPVSAHP 334
GG P +PGPAKD RG V++ P
Sbjct: 146 GGITPRMPGPAKDFVRGSVNSRP 168
>10_08_0153 - 15240707-15241019,15241269-15241723
Length = 255
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 432 PGWSRGMAEDDGGWGPLPGPAKDQSR 355
P W+ +A DDGGW P P D S+
Sbjct: 109 PNWA--LANDDGGWCNPPRPHFDMSQ 132
>03_05_0056 -
20349217-20349484,20349563-20350032,20350049-20350424,
20350546-20350568
Length = 378
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -3
Query: 335 QCTRCLAFGHGRKFCTESV 279
+C RC FGH +K C E V
Sbjct: 238 RCKRCHGFGHLQKTCNEPV 256
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,280,317
Number of Sequences: 37544
Number of extensions: 362991
Number of successful extensions: 1361
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1360
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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