Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11b12
(532 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M38643-1|AAA28939.1| 549|Drosophila melanogaster protein ( D.me... 51 9e-07
M22874-1|AAA28674.1| 583|Drosophila melanogaster nucleic acid-b... 51 9e-07
M14954-1|AAA70221.1| 426|Drosophila melanogaster putative ORF1 ... 48 8e-06
X51968-1|CAA36226.1| 471|Drosophila melanogaster protein ( Dros... 46 3e-05
AJ635224-1|CAG25619.1| 951|Drosophila melanogaster gag protein ... 43 3e-04
M17214-1|AAA28507.1| 122|Drosophila melanogaster protein ( D.me... 42 5e-04
X68130-1|CAA48237.1| 943|Drosophila melanogaster protein ( D.me... 42 7e-04
U06920-1|AAC17188.3| 921|Drosophila melanogaster probable gag p... 42 7e-04
AJ542581-1|CAD65868.3| 965|Drosophila melanogaster gag protein ... 41 0.001
AY118596-1|AAM49965.1| 165|Drosophila melanogaster LD48005p pro... 41 0.001
AY075371-1|AAL68216.1| 165|Drosophila melanogaster GM14667p pro... 41 0.001
AE013599-3513|AAN16117.1| 165|Drosophila melanogaster CG3800-PA... 41 0.001
AJ278684-1|CAB99191.1| 488|Drosophila melanogaster gag-like pro... 40 0.003
X17551-1|CAA35586.1| 565|Drosophila melanogaster ORF1 for putat... 38 0.009
U14101-1|AAC46493.1| 1043|Drosophila melanogaster putative singl... 38 0.009
BT014916-1|AAT47767.1| 409|Drosophila melanogaster RE14563p pro... 38 0.009
AY600955-1|AAT12844.1| 1047|Drosophila melanogaster gag protein ... 38 0.009
AY561850-1|AAS68533.1| 970|Drosophila melanogaster gag protein ... 38 0.009
AJ566116-1|CAD92792.1| 970|Drosophila melanogaster gag protein ... 38 0.009
X68816-2|CAA48714.1| 536|Drosophila melanogaster T-element prot... 38 0.011
S56442-2|AAA14198.2| 536|Drosophila melanogaster Orf2 protein. 38 0.011
AY035777-1|AAK77970.1| 257|Drosophila melanogaster gag protein ... 37 0.020
AF237761-1|AAF81410.1| 501|Drosophila melanogaster unknown prot... 35 0.060
AY118707-1|AAM50567.1| 186|Drosophila melanogaster AT22983p pro... 33 0.32
U26549-1|AAA67954.1| 296|Drosophila melanogaster zinc finger pr... 29 3.0
AE014298-1272|AAO41642.2| 1248|Drosophila melanogaster CG7766-PB... 29 5.2
BT029412-1|ABK57069.1| 320|Drosophila melanogaster IP02511p pro... 28 6.9
BT025009-1|ABE01239.1| 296|Drosophila melanogaster IP02509p pro... 28 6.9
AY119086-1|AAM50946.1| 477|Drosophila melanogaster LP11230p pro... 28 6.9
AJ487856-1|CAD32253.1| 1830|Drosophila melanogaster hypothetical... 28 6.9
AE014296-1941|AAN11886.2| 477|Drosophila melanogaster CG7573-PB... 28 6.9
AE014296-1940|AAF50072.2| 509|Drosophila melanogaster CG7573-PA... 28 6.9
AE014134-157|AAF51453.1| 296|Drosophila melanogaster CG3642-PA ... 28 6.9
D49534-1|BAA08478.1| 1893|Drosophila melanogaster cno protein. 28 9.1
AY118904-1|AAM50764.1| 743|Drosophila melanogaster LD16387p pro... 28 9.1
AY058547-1|AAL13776.1| 2051|Drosophila melanogaster LD24616p pro... 28 9.1
AE014297-3302|AAF56118.1| 743|Drosophila melanogaster CG4448-PA... 28 9.1
AE014297-185|AAF52067.2| 2051|Drosophila melanogaster CG2534-PA,... 28 9.1
AE014297-184|AAN13260.1| 1882|Drosophila melanogaster CG2534-PB,... 28 9.1
>M38643-1|AAA28939.1| 549|Drosophila melanogaster protein (
D.melanogaster mobileelement jockey gag-specific protein
gene, complete cds.).
Length = 549
Score = 51.2 bits (117), Expect = 9e-07
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 2/128 (1%)
Frame = -3
Query: 509 LSQEDKEMTIKFKKRTKNPKTAHVIVQVGPVVWQ--RMTEAGALYLDLQRIRVEDQSPLI 336
++++D E T FK R ++ ++ GP V + ++T G + ++R + L+
Sbjct: 315 VNEDDNEATKNFKTRQN---LFYINLKQGPNVKESLKITRLGRYRVTVER--ATRRKELL 369
Query: 335 QCTRCLAFGHGRKFCTESVDRCSHCGGPHLREKCADFIAGTEPQCCNCSHSGLRKADHNA 156
QC RC FGH + +C + C C GPH+ A C C + G DH +
Sbjct: 370 QCQRCQIFGHSKNYCAQD-PICGKCSGPHMTG-----FALCISDVCLCINCG---GDHVS 420
Query: 155 FSAECPIR 132
CP+R
Sbjct: 421 TDKSCPVR 428
>M22874-1|AAA28674.1| 583|Drosophila melanogaster nucleic
acid-binding protiein protein.
Length = 583
Score = 51.2 bits (117), Expect = 9e-07
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 2/128 (1%)
Frame = -3
Query: 509 LSQEDKEMTIKFKKRTKNPKTAHVIVQVGPVVWQ--RMTEAGALYLDLQRIRVEDQSPLI 336
++++D E T FK R ++ ++ GP V + ++T G + ++R + L+
Sbjct: 349 VNEDDNEATKNFKTRQN---LFYINLKQGPNVKESLKITRLGRYRVTVER--ATRRKELL 403
Query: 335 QCTRCLAFGHGRKFCTESVDRCSHCGGPHLREKCADFIAGTEPQCCNCSHSGLRKADHNA 156
QC RC FGH + +C + C C GPH+ A C C + G DH +
Sbjct: 404 QCQRCQIFGHSKNYCAQD-PICGKCSGPHMTG-----FALCISDVCLCINCG---GDHVS 454
Query: 155 FSAECPIR 132
CP+R
Sbjct: 455 TDKSCPVR 462
>M14954-1|AAA70221.1| 426|Drosophila melanogaster putative ORF1
protein.
Length = 426
Score = 48.0 bits (109), Expect = 8e-06
Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 4/96 (4%)
Frame = -3
Query: 371 QRIRVEDQSPL-IQCTRCLAFGHGRKFCTESVDRCSHCG-GPHLR--EKCADFIAGTEPQ 204
+ +RV D PL ++C +CL FGH C +SV+ C +C H EKC + E
Sbjct: 174 ETVRVRDYIPLPLRCKKCLRFGHPTPIC-KSVETCINCSETKHTNDGEKCTN-----EKN 227
Query: 203 CCNCSHSGLRKADHNAFSAECPIRKKWDYLARANTT 96
C NC ++ H+ +CP K L TT
Sbjct: 228 CLNCRNNPELDHQHSPIDRKCPTFIKNQELTAIKTT 263
>X51968-1|CAA36226.1| 471|Drosophila melanogaster protein (
Drosophila melanogasterDNA for type I retrotransposable
element R1Dm. ).
Length = 471
Score = 46.0 bits (104), Expect = 3e-05
Identities = 40/144 (27%), Positives = 61/144 (42%), Gaps = 13/144 (9%)
Frame = -3
Query: 527 EDIFRDLSQE--DKEMTI-KFKKR----TK-----NPKTAHVIVQVGPVVWQRMTEAGAL 384
E+ ++L + D EMT+ +FKK TK + T +V ++V ++ + G +
Sbjct: 323 EEFMQELHENNFDSEMTLAQFKKSVHLVTKAWSATDGATVNVTLEVDDRAMAKL-DVGRV 381
Query: 383 YLDLQRIRVEDQSPLIQCTRCLAFGHGRKFCTESVDRCSHCGGP-HLREKCADFIAGTEP 207
Y+ R Q C RC+ F H C + C CG H KC + +
Sbjct: 382 YIKWFSFRCRSQVRTYACHRCVGFDHKVSECRQKESVCRQCGQQGHTAAKCQNPV----- 436
Query: 206 QCCNCSHSGLRKADHNAFSAECPI 135
C NC H G + + H S CPI
Sbjct: 437 DCRNCRHRG-QPSGHYMLSNACPI 459
>AJ635224-1|CAG25619.1| 951|Drosophila melanogaster gag protein
protein.
Length = 951
Score = 42.7 bits (96), Expect = 3e-04
Identities = 23/72 (31%), Positives = 33/72 (45%)
Frame = -3
Query: 404 MTEAGALYLDLQRIRVEDQSPLIQCTRCLAFGHGRKFCTESVDRCSHCGGPHLREKCADF 225
+ + G +D++R + + P +QC RC F H + C + RC C G HL C
Sbjct: 634 LKQIGGQRVDIER-KNRTREP-VQCYRCQGFRHAKNSCMKP-PRCMKCAGDHL-SSCCTK 689
Query: 224 IAGTEPQCCNCS 189
T C NCS
Sbjct: 690 PRSTPATCVNCS 701
>M17214-1|AAA28507.1| 122|Drosophila melanogaster protein (
D.melanogaster Fw repetitiveelement putative reverse
transcriptase, complete cds,and putative binding
protein, 3' end. ).
Length = 122
Score = 41.9 bits (94), Expect = 5e-04
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Frame = -3
Query: 371 QRIRVED---QSPLIQCTRCLAFGHGRKFCTESVDRCSHCGGPHLREKC-ADFIAGTEPQ 204
+RI VE+ ++ +QCT C +GH R +CT C CG H ++C + E +
Sbjct: 24 RRITVEEPHKRNAPVQCTNCQEYGHTRSYCT-LAPVCVVCGDLHDSKQCQINKENACEKK 82
Query: 203 CCNCSHSGLRKADHNAFSAECPIRKK 126
C NC +H A CPI K+
Sbjct: 83 CNNCG------GNHTANYRGCPIYKE 102
>X68130-1|CAA48237.1| 943|Drosophila melanogaster protein (
D.melanogaster DNA sequenceof Het-A transposable element
9D4. ).
Length = 943
Score = 41.5 bits (93), Expect = 7e-04
Identities = 23/72 (31%), Positives = 32/72 (44%)
Frame = -3
Query: 404 MTEAGALYLDLQRIRVEDQSPLIQCTRCLAFGHGRKFCTESVDRCSHCGGPHLREKCADF 225
+ + G +D++R + + P +QC RC F H + C RC C G HL C
Sbjct: 626 LKQIGGQRVDIER-KNRTRDP-VQCYRCQGFRHAKNSCMRP-PRCMKCAGEHL-SSCCTK 681
Query: 224 IAGTEPQCCNCS 189
T C NCS
Sbjct: 682 PRTTPATCVNCS 693
>U06920-1|AAC17188.3| 921|Drosophila melanogaster probable gag
protein protein.
Length = 921
Score = 41.5 bits (93), Expect = 7e-04
Identities = 23/72 (31%), Positives = 32/72 (44%)
Frame = -3
Query: 404 MTEAGALYLDLQRIRVEDQSPLIQCTRCLAFGHGRKFCTESVDRCSHCGGPHLREKCADF 225
+ + G +D++R + + P +QC RC F H + C RC C G HL C
Sbjct: 604 LKQIGGQRVDIER-KNRTREP-VQCYRCQGFRHAKNSCMRP-PRCMKCAGEHL-SSCCTK 659
Query: 224 IAGTEPQCCNCS 189
T C NCS
Sbjct: 660 PRTTPATCVNCS 671
>AJ542581-1|CAD65868.3| 965|Drosophila melanogaster gag protein
protein.
Length = 965
Score = 41.1 bits (92), Expect = 0.001
Identities = 23/72 (31%), Positives = 32/72 (44%)
Frame = -3
Query: 404 MTEAGALYLDLQRIRVEDQSPLIQCTRCLAFGHGRKFCTESVDRCSHCGGPHLREKCADF 225
+ + G +D++R + + P +QC RC F H + C RC C G HL C
Sbjct: 641 LKQLGGQRVDIER-KNRTREP-VQCYRCQGFRHSKNSCMRP-PRCMKCAGGHL-SSCCTK 696
Query: 224 IAGTEPQCCNCS 189
T C NCS
Sbjct: 697 PRTTPATCVNCS 708
>AY118596-1|AAM49965.1| 165|Drosophila melanogaster LD48005p
protein.
Length = 165
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = -3
Query: 335 QCTRCLAFGHGRKFCTESVDRCSHCGG-PHLREKCADFIAGTEPQCCNCSHSG 180
+C +C FGH + C E +RC C G H+ + C P C C+ +G
Sbjct: 56 KCYKCNQFGHFARACPEEAERCYRCNGIGHISKDCTQ---ADNPTCYRCNKTG 105
Score = 33.1 bits (72), Expect = 0.24
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = -3
Query: 359 VEDQSPL-IQCTRCLAFGHGRKFCTESVDRCSHCG-GPHLREKC 234
V ++ P + C +C GH K C E+ C CG HLR +C
Sbjct: 115 VNERGPTNVSCYKCNRTGHISKNCPETSKTCYGCGKSGHLRREC 158
>AY075371-1|AAL68216.1| 165|Drosophila melanogaster GM14667p
protein.
Length = 165
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = -3
Query: 335 QCTRCLAFGHGRKFCTESVDRCSHCGG-PHLREKCADFIAGTEPQCCNCSHSG 180
+C +C FGH + C E +RC C G H+ + C P C C+ +G
Sbjct: 56 KCYKCNQFGHFARACPEEAERCYRCNGIGHISKDCTQ---ADNPTCYRCNKTG 105
Score = 33.1 bits (72), Expect = 0.24
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = -3
Query: 359 VEDQSPL-IQCTRCLAFGHGRKFCTESVDRCSHCG-GPHLREKC 234
V ++ P + C +C GH K C E+ C CG HLR +C
Sbjct: 115 VNERGPTNVSCYKCNRTGHISKNCPETSKTCYGCGKSGHLRREC 158
>AE013599-3513|AAN16117.1| 165|Drosophila melanogaster CG3800-PA
protein.
Length = 165
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = -3
Query: 335 QCTRCLAFGHGRKFCTESVDRCSHCGG-PHLREKCADFIAGTEPQCCNCSHSG 180
+C +C FGH + C E +RC C G H+ + C P C C+ +G
Sbjct: 56 KCYKCNQFGHFARACPEEAERCYRCNGIGHISKDCTQ---ADNPTCYRCNKTG 105
Score = 33.1 bits (72), Expect = 0.24
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = -3
Query: 359 VEDQSPL-IQCTRCLAFGHGRKFCTESVDRCSHCG-GPHLREKC 234
V ++ P + C +C GH K C E+ C CG HLR +C
Sbjct: 115 VNERGPTNVSCYKCNRTGHISKNCPETSKTCYGCGKSGHLRREC 158
>AJ278684-1|CAB99191.1| 488|Drosophila melanogaster gag-like
protein protein.
Length = 488
Score = 39.5 bits (88), Expect = 0.003
Identities = 31/92 (33%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Frame = -3
Query: 392 GALYLDLQRIRVEDQSPLIQCTRCLAFGHGRKFCTESVDR---CSHCG-GPHLREKCADF 225
G + + R R+ I+C RCL FGH +C +SVDR C CG H + C
Sbjct: 389 GVVTVGWSRCRIAQDVRPIRCFRCLEFGHRAPYC-KSVDRSDCCLRCGEHGHKAKGCV-- 445
Query: 224 IAGTEPQCCNCSHSGLRKADHNAFSAECPIRK 129
P+C CS S + K +H CP K
Sbjct: 446 ---APPRCLICS-SDVDK-NHATGGFACPTYK 472
>X17551-1|CAA35586.1| 565|Drosophila melanogaster ORF1 for putative
RNA bindingprotein protein.
Length = 565
Score = 37.9 bits (84), Expect = 0.009
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Frame = -3
Query: 383 YLDLQRIRVEDQSPLI---QCTRCLAFGHGRKFCT-ESVDRCSHCGGPHLREKC-ADFIA 219
YL +RI VE+ I QCT C +GH + +CT +SV C C PH C +
Sbjct: 364 YLLHRRITVEEPHKRINPVQCTNCQEYGHTKAYCTLKSV--CVVCSEPHTTANCPKNKDD 421
Query: 218 GTEPQCCNC 192
+ +C NC
Sbjct: 422 KSVKKCSNC 430
>U14101-1|AAC46493.1| 1043|Drosophila melanogaster putative
single-stranded nucleicacid binding protein protein.
Length = 1043
Score = 37.9 bits (84), Expect = 0.009
Identities = 26/97 (26%), Positives = 36/97 (37%), Gaps = 3/97 (3%)
Frame = -3
Query: 464 TKNPKTAHVIVQVGPVVWQRMTEAGALYLDLQRIRVEDQ---SPLIQCTRCLAFGHGRKF 294
T+NP H + V + L Q ++VE + QC RC FGH + +
Sbjct: 748 TRNPMRIHEVEVVPKADGSHLKVLLLKSLGGQTVKVERKRVSKDPTQCHRCQCFGHTKNY 807
Query: 293 CTESVDRCSHCGGPHLREKCADFIAGTEPQCCNCSHS 183
C +C CG H C C NC+ S
Sbjct: 808 CRNPF-KCMKCGQLHATVSCTK-PKNLPATCANCNGS 842
>BT014916-1|AAT47767.1| 409|Drosophila melanogaster RE14563p
protein.
Length = 409
Score = 37.9 bits (84), Expect = 0.009
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Frame = -3
Query: 383 YLDLQRIRVEDQSPLI---QCTRCLAFGHGRKFCT-ESVDRCSHCGGPHLREKC-ADFIA 219
YL +RI VE+ I QCT C +GH + +CT +SV C C PH C +
Sbjct: 208 YLLHRRITVEEPHKRINPVQCTNCQEYGHTKAYCTLKSV--CVVCSEPHTTANCPKNKDD 265
Query: 218 GTEPQCCNC 192
+ +C NC
Sbjct: 266 KSVKKCSNC 274
>AY600955-1|AAT12844.1| 1047|Drosophila melanogaster gag protein
protein.
Length = 1047
Score = 37.9 bits (84), Expect = 0.009
Identities = 26/97 (26%), Positives = 36/97 (37%), Gaps = 3/97 (3%)
Frame = -3
Query: 464 TKNPKTAHVIVQVGPVVWQRMTEAGALYLDLQRIRVEDQ---SPLIQCTRCLAFGHGRKF 294
T+NP H + V + L Q ++VE + QC RC FGH + +
Sbjct: 748 TRNPMRIHEVEVVPKADGSHLKVLLIKSLGGQTVKVERKRVSKDPTQCHRCQCFGHTKNY 807
Query: 293 CTESVDRCSHCGGPHLREKCADFIAGTEPQCCNCSHS 183
C +C CG H C C NC+ S
Sbjct: 808 CRNPF-KCMKCGQLHASVSCTK-PKNLPATCANCNGS 842
>AY561850-1|AAS68533.1| 970|Drosophila melanogaster gag protein
protein.
Length = 970
Score = 37.9 bits (84), Expect = 0.009
Identities = 26/97 (26%), Positives = 36/97 (37%), Gaps = 3/97 (3%)
Frame = -3
Query: 464 TKNPKTAHVIVQVGPVVWQRMTEAGALYLDLQRIRVEDQ---SPLIQCTRCLAFGHGRKF 294
T+NP H + V + L Q ++VE + QC RC FGH + +
Sbjct: 671 TRNPMRIHEVEVVPKADGSHLKVLLLKSLGGQTVKVERKRVSKDPTQCHRCQCFGHTKNY 730
Query: 293 CTESVDRCSHCGGPHLREKCADFIAGTEPQCCNCSHS 183
C +C CG H C C NC+ S
Sbjct: 731 CRNPF-KCMKCGQLHATVSCTK-PKNLPATCANCNGS 765
>AJ566116-1|CAD92792.1| 970|Drosophila melanogaster gag protein
protein.
Length = 970
Score = 37.9 bits (84), Expect = 0.009
Identities = 26/97 (26%), Positives = 36/97 (37%), Gaps = 3/97 (3%)
Frame = -3
Query: 464 TKNPKTAHVIVQVGPVVWQRMTEAGALYLDLQRIRVEDQ---SPLIQCTRCLAFGHGRKF 294
T+NP H + V + L Q ++VE + QC RC FGH + +
Sbjct: 671 TRNPMRIHEVEVVPKADGSHLKVLLLKSLGGQTVKVERKRVSKDPTQCHRCQCFGHTKNY 730
Query: 293 CTESVDRCSHCGGPHLREKCADFIAGTEPQCCNCSHS 183
C +C CG H C C NC+ S
Sbjct: 731 CRNPF-KCMKCGQLHATVSCTK-PKNLPATCANCNGS 765
>X68816-2|CAA48714.1| 536|Drosophila melanogaster T-element
protein.
Length = 536
Score = 37.5 bits (83), Expect = 0.011
Identities = 22/72 (30%), Positives = 31/72 (43%)
Frame = -3
Query: 404 MTEAGALYLDLQRIRVEDQSPLIQCTRCLAFGHGRKFCTESVDRCSHCGGPHLREKCADF 225
+ + G +D++R + + P +QC RC F H + C RC G HL C
Sbjct: 219 LKQIGGQRVDIER-KNRTREP-VQCYRCQGFRHAKNSCMRP-PRCMKSAGEHL-SSCCTK 274
Query: 224 IAGTEPQCCNCS 189
T C NCS
Sbjct: 275 PRTTPATCVNCS 286
>S56442-2|AAA14198.2| 536|Drosophila melanogaster Orf2 protein.
Length = 536
Score = 37.5 bits (83), Expect = 0.011
Identities = 22/72 (30%), Positives = 31/72 (43%)
Frame = -3
Query: 404 MTEAGALYLDLQRIRVEDQSPLIQCTRCLAFGHGRKFCTESVDRCSHCGGPHLREKCADF 225
+ + G +D++R + + P +QC RC F H + C RC G HL C
Sbjct: 219 LKQIGGQRVDIER-KNRTREP-VQCYRCQGFRHAKNSCMRP-PRCMKSAGEHL-SSCCTK 274
Query: 224 IAGTEPQCCNCS 189
T C NCS
Sbjct: 275 PRTTPATCVNCS 286
>AY035777-1|AAK77970.1| 257|Drosophila melanogaster gag protein
protein.
Length = 257
Score = 36.7 bits (81), Expect = 0.020
Identities = 17/51 (33%), Positives = 21/51 (41%)
Frame = -3
Query: 335 QCTRCLAFGHGRKFCTESVDRCSHCGGPHLREKCADFIAGTEPQCCNCSHS 183
QC RC FGH + +C +C CG H C C NC+ S
Sbjct: 4 QCHRCQCFGHTKNYCRNPF-KCMKCGQLHATVSCTK-PKNLPATCANCNGS 52
>AF237761-1|AAF81410.1| 501|Drosophila melanogaster unknown
protein.
Length = 501
Score = 35.1 bits (77), Expect = 0.060
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = -3
Query: 350 QSPLIQCTRCLAFGHGRKFCTESVDRCSHCGGPHLREKCADFIAGTEP--QCCNCSHSG 180
++ ++QC RC GH K+C ++ C C G H + C T P + C C + G
Sbjct: 281 RNAIVQCHRCQQIGHTAKYCRKA-HICVKCAGEHPAKDC------TRPRIELCTCYNCG 332
>AY118707-1|AAM50567.1| 186|Drosophila melanogaster AT22983p
protein.
Length = 186
Score = 32.7 bits (71), Expect = 0.32
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Frame = -3
Query: 359 VEDQSPLIQCTRCLAFGHGRKFCTESVDR---CSHCGGPHLREKCADFIAGTEPQCCNCS 189
+++ P +C RCL GH C +VDR C CG + +C E +C C+
Sbjct: 91 IKELEPRQRCFRCLEEGHIAAHCRSTVDRSQCCFRCGTAGHKAECP-----KEAKCFLCA 145
Query: 188 HSG 180
G
Sbjct: 146 SRG 148
>U26549-1|AAA67954.1| 296|Drosophila melanogaster zinc finger
protein protein.
Length = 296
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -3
Query: 266 HCGGPHLREK-CADFIAGTEPQCCNCSH 186
HC HLR C D++AG P+ +C H
Sbjct: 139 HCRHQHLRRVLCMDYLAGFCPEAPSCKH 166
>AE014298-1272|AAO41642.2| 1248|Drosophila melanogaster CG7766-PB,
isoform B protein.
Length = 1248
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = -1
Query: 175 GRPTITLLAPNARYEKSGITWLALTQHMHNLNAGH 71
GRPTITL+A + ++ I LA+ Q M L +G+
Sbjct: 559 GRPTITLMATHYMLDQDKIP-LAMIQTMRKLKSGY 592
>BT029412-1|ABK57069.1| 320|Drosophila melanogaster IP02511p
protein.
Length = 320
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -3
Query: 266 HCGGPHLREK-CADFIAGTEPQCCNCSH 186
HC HLR C D++AG P+ +C H
Sbjct: 163 HCRHQHLRRVLCMDYLAGFCPEGPSCKH 190
>BT025009-1|ABE01239.1| 296|Drosophila melanogaster IP02509p
protein.
Length = 296
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -3
Query: 266 HCGGPHLREK-CADFIAGTEPQCCNCSH 186
HC HLR C D++AG P+ +C H
Sbjct: 139 HCRHQHLRRVLCMDYLAGFCPEGPSCKH 166
>AY119086-1|AAM50946.1| 477|Drosophila melanogaster LP11230p
protein.
Length = 477
Score = 28.3 bits (60), Expect = 6.9
Identities = 10/32 (31%), Positives = 15/32 (46%)
Frame = -2
Query: 426 WSRGMAEDDGGWGPLPGPAKDQSRGPVSAHPM 331
W+RG + DD WG + D+ AH +
Sbjct: 302 WNRGFSSDDFDWGQMGAGLNDEQLAAFVAHQL 333
>AJ487856-1|CAD32253.1| 1830|Drosophila melanogaster hypothetical
protein protein.
Length = 1830
Score = 28.3 bits (60), Expect = 6.9
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 4/88 (4%)
Frame = -3
Query: 500 EDKEMTIKFKKRTKNPKTAHVIVQVGPVVWQRMTEAGALYLDLQRIRVEDQSPLIQ---- 333
ED + T KR ++ +T Q G + + L ++ V+ +S I+
Sbjct: 404 EDMKPTQAVPKRLQSFETKVSTKQKGCDICSKENHPVRLCPRFLQMSVDSRSGYIKKKQL 463
Query: 332 CTRCLAFGHGRKFCTESVDRCSHCGGPH 249
C C A GH + CT S+ C C G H
Sbjct: 464 CLNCFARGHQLRDCT-SMHSCFTCKGRH 490
>AE014296-1941|AAN11886.2| 477|Drosophila melanogaster CG7573-PB,
isoform B protein.
Length = 477
Score = 28.3 bits (60), Expect = 6.9
Identities = 10/32 (31%), Positives = 15/32 (46%)
Frame = -2
Query: 426 WSRGMAEDDGGWGPLPGPAKDQSRGPVSAHPM 331
W+RG + DD WG + D+ AH +
Sbjct: 302 WNRGFSSDDFDWGQMGAGLNDEQLAAFVAHQL 333
>AE014296-1940|AAF50072.2| 509|Drosophila melanogaster CG7573-PA,
isoform A protein.
Length = 509
Score = 28.3 bits (60), Expect = 6.9
Identities = 10/32 (31%), Positives = 15/32 (46%)
Frame = -2
Query: 426 WSRGMAEDDGGWGPLPGPAKDQSRGPVSAHPM 331
W+RG + DD WG + D+ AH +
Sbjct: 334 WNRGFSSDDFDWGQMGAGLNDEQLAAFVAHQL 365
>AE014134-157|AAF51453.1| 296|Drosophila melanogaster CG3642-PA
protein.
Length = 296
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -3
Query: 266 HCGGPHLREK-CADFIAGTEPQCCNCSH 186
HC HLR C D++AG P+ +C H
Sbjct: 139 HCRHQHLRRVLCMDYLAGFCPEGPSCKH 166
>D49534-1|BAA08478.1| 1893|Drosophila melanogaster cno protein.
Length = 1893
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = -3
Query: 452 KTAHVIVQVGPVVWQRMTEAGALYLDLQRIRVEDQSPLIQ 333
+ A +V+ GPVV + + GA+Y L + ++ SP+IQ
Sbjct: 908 RAADYLVRTGPVVSLEVAKQGAIYHGLATL-LQQPSPVIQ 946
>AY118904-1|AAM50764.1| 743|Drosophila melanogaster LD16387p
protein.
Length = 743
Score = 27.9 bits (59), Expect = 9.1
Identities = 22/75 (29%), Positives = 36/75 (48%)
Frame = -2
Query: 486 DHKVQEEDKKSQNGARHCPGWSRGMAEDDGGWGPLPGPAKDQSRGPVSAHPMHEVPRIWT 307
D K EE+++ +N ARHC ++ + GG+ L G K + SAH P +++
Sbjct: 461 DVKCSEEERRERNRARHCK-YADNSYNEYGGF-QLRGHTKGVTDVRFSAH----YPLMYS 514
Query: 306 WSKILHRECGQMQSL 262
SK C + +L
Sbjct: 515 VSKDATMRCWRAHNL 529
>AY058547-1|AAL13776.1| 2051|Drosophila melanogaster LD24616p protein.
Length = 2051
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = -3
Query: 452 KTAHVIVQVGPVVWQRMTEAGALYLDLQRIRVEDQSPLIQ 333
+ A +V+ GPVV + + GA+Y L + ++ SP+IQ
Sbjct: 1077 RAADYLVRTGPVVSLEVAKQGAIYHGLATL-LQQPSPVIQ 1115
>AE014297-3302|AAF56118.1| 743|Drosophila melanogaster CG4448-PA
protein.
Length = 743
Score = 27.9 bits (59), Expect = 9.1
Identities = 22/75 (29%), Positives = 36/75 (48%)
Frame = -2
Query: 486 DHKVQEEDKKSQNGARHCPGWSRGMAEDDGGWGPLPGPAKDQSRGPVSAHPMHEVPRIWT 307
D K EE+++ +N ARHC ++ + GG+ L G K + SAH P +++
Sbjct: 461 DVKCSEEERRERNRARHCK-YADNSYNEYGGF-QLRGHTKGVTDVRFSAH----YPLMYS 514
Query: 306 WSKILHRECGQMQSL 262
SK C + +L
Sbjct: 515 VSKDATMRCWRAHNL 529
>AE014297-185|AAF52067.2| 2051|Drosophila melanogaster CG2534-PA,
isoform A protein.
Length = 2051
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = -3
Query: 452 KTAHVIVQVGPVVWQRMTEAGALYLDLQRIRVEDQSPLIQ 333
+ A +V+ GPVV + + GA+Y L + ++ SP+IQ
Sbjct: 1077 RAADYLVRTGPVVSLEVAKQGAIYHGLATL-LQQPSPVIQ 1115
>AE014297-184|AAN13260.1| 1882|Drosophila melanogaster CG2534-PB,
isoform B protein.
Length = 1882
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = -3
Query: 452 KTAHVIVQVGPVVWQRMTEAGALYLDLQRIRVEDQSPLIQ 333
+ A +V+ GPVV + + GA+Y L + ++ SP+IQ
Sbjct: 908 RAADYLVRTGPVVSLEVAKQGAIYHGLATL-LQQPSPVIQ 946
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,075,605
Number of Sequences: 53049
Number of extensions: 596326
Number of successful extensions: 2638
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 2483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2623
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1991467008
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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