Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11b12
(532 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF540769-1|ABQ14707.1| 620|Apis mellifera adenosine deaminase p... 29 0.022
AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex det... 24 1.1
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 23 2.6
AY569703-1|AAS86656.1| 396|Apis mellifera complementary sex det... 23 2.6
AY569701-1|AAS86654.1| 407|Apis mellifera complementary sex det... 23 2.6
AY569700-1|AAS86653.1| 407|Apis mellifera complementary sex det... 23 2.6
AY569699-1|AAS86652.1| 396|Apis mellifera complementary sex det... 23 2.6
AY736135-1|AAU84701.1| 253|Apis mellifera take-out-like carrier... 22 3.4
AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex det... 22 3.4
AY569720-1|AAS86673.1| 406|Apis mellifera complementary sex det... 21 5.9
AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex det... 21 5.9
AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex det... 21 5.9
AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex det... 21 5.9
AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex det... 21 5.9
AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex det... 21 5.9
AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex det... 21 5.9
AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex det... 21 5.9
AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex det... 21 5.9
AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex det... 21 5.9
AY569694-1|AAS86647.1| 400|Apis mellifera complementary sex det... 21 5.9
AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex det... 21 5.9
AY352276-1|AAQ67417.1| 385|Apis mellifera complementary sex det... 21 5.9
AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex det... 21 5.9
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 21 5.9
AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex det... 21 5.9
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr... 21 7.9
>EF540769-1|ABQ14707.1| 620|Apis mellifera adenosine deaminase
protein.
Length = 620
Score = 29.5 bits (63), Expect = 0.022
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = -3
Query: 524 DIFRDLSQEDKEMTIKFKKRTKNPKTAHVIVQVGPVVWQRMTEAGALY 381
D D+++ D + FK T+ PK + ++ GPV G +Y
Sbjct: 122 DFTSDVTERDNHLVNAFKTLTQEPKNTNKFLEKGPVALINELYPGVVY 169
>AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 23.8 bits (49), Expect = 1.1
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -3
Query: 524 DIFRDLSQEDKEMTIKFKKRTKNPKTAHVIVQVG 423
+I RDL + T++ K+ T NP+ +I + G
Sbjct: 134 EIHRDLPGKSTTTTVEVKRDTINPEDVILIRRTG 167
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 22.6 bits (46), Expect = 2.6
Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Frame = -1
Query: 208 RSAATAHTLGCGRPTITLLAPNARYEKSGITWLALTQHMHN---LNAGHYTARTHRHKAH 38
R A TL G P++ L + ITW + + N L G Y +H
Sbjct: 397 RQAFAEETLQPG-PSMFLKCVASGNPTPEITWELDGKRLSNTERLQVGQYVTVNGDVVSH 455
Query: 37 RNKNTTHTN 11
N ++THTN
Sbjct: 456 LNISSTHTN 464
>AY569703-1|AAS86656.1| 396|Apis mellifera complementary sex
determiner protein.
Length = 396
Score = 22.6 bits (46), Expect = 2.6
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -3
Query: 524 DIFRDLSQEDKEMTIKFKKRTKNPKTAHVIVQVG 423
+I RDL + T++ K+ NP+ VI + G
Sbjct: 123 EIHRDLPGKSTTTTVEVKRDIINPEDVIVIRRTG 156
>AY569701-1|AAS86654.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 22.6 bits (46), Expect = 2.6
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -3
Query: 524 DIFRDLSQEDKEMTIKFKKRTKNPKTAHVIVQVG 423
+I RDL + T++ K+ NP+ VI + G
Sbjct: 134 EIHRDLPGKSTTTTVEVKRDIINPEDVIVIRRTG 167
>AY569700-1|AAS86653.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 22.6 bits (46), Expect = 2.6
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -3
Query: 524 DIFRDLSQEDKEMTIKFKKRTKNPKTAHVIVQVG 423
+I RDL + T++ K+ NP+ VI + G
Sbjct: 134 EIHRDLPGKSTTTTVEVKRDIINPEDVIVIRRTG 167
>AY569699-1|AAS86652.1| 396|Apis mellifera complementary sex
determiner protein.
Length = 396
Score = 22.6 bits (46), Expect = 2.6
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -3
Query: 524 DIFRDLSQEDKEMTIKFKKRTKNPKTAHVIVQVG 423
+I RDL + T++ K+ NP+ VI + G
Sbjct: 123 EIHRDLPGKSTTTTVEVKRDIINPEDVIVIRRTG 156
>AY736135-1|AAU84701.1| 253|Apis mellifera take-out-like carrier
protein JHBP-1 protein.
Length = 253
Score = 22.2 bits (45), Expect = 3.4
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -1
Query: 139 RYEKSGITWLALTQHMHNLN 80
+YEK+G T+L + +H N
Sbjct: 165 KYEKNGETYLRIKKHAVKFN 184
>AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 22.2 bits (45), Expect = 3.4
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -3
Query: 524 DIFRDLSQEDKEMTIKFKKRTKNPKTAHVIVQVG 423
+I RDL + T + K+ T NP+ +I + G
Sbjct: 134 EIHRDLPGKSTTTTAEVKRDTINPEDVILIRRTG 167
>AY569720-1|AAS86673.1| 406|Apis mellifera complementary sex
determiner protein.
Length = 406
Score = 21.4 bits (43), Expect = 5.9
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = -3
Query: 524 DIFRDLSQEDKEMTIKFKKRTKNPKTAHVIVQVG 423
+I RDL + T++ K+ NP+ +I + G
Sbjct: 134 EIHRDLPGKSTTTTVEVKRDIINPEDVILIRRTG 167
>AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex
determiner protein.
Length = 406
Score = 21.4 bits (43), Expect = 5.9
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = -3
Query: 524 DIFRDLSQEDKEMTIKFKKRTKNPKTAHVIVQVG 423
+I RDL + T++ K+ NP+ +I + G
Sbjct: 134 EIHRDLPGKSTTTTVEVKRDIINPEDVILIRRTG 167
>AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.4 bits (43), Expect = 5.9
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = -3
Query: 524 DIFRDLSQEDKEMTIKFKKRTKNPKTAHVIVQVG 423
+I RDL + T++ K+ NP+ +I + G
Sbjct: 134 EIHRDLPGKSTTTTVEVKRDIINPEDVILIRRTG 167
>AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.4 bits (43), Expect = 5.9
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = -3
Query: 524 DIFRDLSQEDKEMTIKFKKRTKNPKTAHVIVQVG 423
+I RDL + T++ K+ NP+ +I + G
Sbjct: 134 EIHRDLPGKSTTTTVEVKRDIINPEDVILIRRTG 167
>AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 21.4 bits (43), Expect = 5.9
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = -3
Query: 524 DIFRDLSQEDKEMTIKFKKRTKNPKTAHVIVQVG 423
+I RDL + T++ K+ NP+ +I + G
Sbjct: 123 EIHRDLPGKSTTTTVEVKRDIINPEDVILIRRTG 156
>AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex
determiner protein.
Length = 426
Score = 21.4 bits (43), Expect = 5.9
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = -3
Query: 524 DIFRDLSQEDKEMTIKFKKRTKNPKTAHVIVQVG 423
+I RDL + T++ K+ NP+ +I + G
Sbjct: 134 EIHRDLPGKSTTTTVEVKRDIINPEDVILIRRTG 167
>AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 21.4 bits (43), Expect = 5.9
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = -3
Query: 524 DIFRDLSQEDKEMTIKFKKRTKNPKTAHVIVQVG 423
+I RDL + T++ K+ NP+ +I + G
Sbjct: 134 EIHRDLPGKSTTTTVEVKRDIINPEDVILIRRTG 167
>AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex
determiner protein.
Length = 413
Score = 21.4 bits (43), Expect = 5.9
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = -3
Query: 524 DIFRDLSQEDKEMTIKFKKRTKNPKTAHVIVQVG 423
+I RDL + T++ K+ NP+ +I + G
Sbjct: 134 EIHRDLPGKSTTTTVEVKRDIINPEDVILIRRTG 167
>AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 21.4 bits (43), Expect = 5.9
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = -3
Query: 524 DIFRDLSQEDKEMTIKFKKRTKNPKTAHVIVQVG 423
+I RDL + T++ K+ NP+ +I + G
Sbjct: 134 EIHRDLPGKSTTTTVEVKRDIINPEDVILIRRTG 167
>AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 21.4 bits (43), Expect = 5.9
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = -3
Query: 524 DIFRDLSQEDKEMTIKFKKRTKNPKTAHVIVQVG 423
+I RDL + T++ K+ NP+ +I + G
Sbjct: 134 EIHRDLPGKSTTTTVEVKRDIINPEDVILIRRTG 167
>AY569694-1|AAS86647.1| 400|Apis mellifera complementary sex
determiner protein.
Length = 400
Score = 21.4 bits (43), Expect = 5.9
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = -3
Query: 524 DIFRDLSQEDKEMTIKFKKRTKNPKTAHVIVQVG 423
+I RDL + T++ K+ NP+ +I + G
Sbjct: 123 EIHRDLPGKSTTTTVEVKRDIINPEDVILIRRTG 156
>AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex
determiner protein.
Length = 418
Score = 21.4 bits (43), Expect = 5.9
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = -3
Query: 524 DIFRDLSQEDKEMTIKFKKRTKNPKTAHVIVQVG 423
+I RDL + T++ K+ NP+ +I + G
Sbjct: 139 EIHRDLPGKSTTTTVEVKRDIINPEDVILIRRTG 172
>AY352276-1|AAQ67417.1| 385|Apis mellifera complementary sex
determiner protein.
Length = 385
Score = 21.4 bits (43), Expect = 5.9
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = -3
Query: 524 DIFRDLSQEDKEMTIKFKKRTKNPKTAHVIVQVG 423
+I RDL + T++ K+ NP+ +I + G
Sbjct: 134 EIHRDLPGKSTTTTVEVKRDIINPEDVILIRRTG 167
>AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex
determiner protein.
Length = 425
Score = 21.4 bits (43), Expect = 5.9
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = -3
Query: 524 DIFRDLSQEDKEMTIKFKKRTKNPKTAHVIVQVG 423
+I RDL + T++ K+ NP+ +I + G
Sbjct: 134 EIHRDLPGKSTTTTVEVKRDIINPEDVILIRRTG 167
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 21.4 bits (43), Expect = 5.9
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = -3
Query: 524 DIFRDLSQEDKEMTIKFKKRTKNPKTAHVIVQVG 423
+I RDL + T++ K+ NP+ +I + G
Sbjct: 134 EIHRDLPGKSTTTTVEVKRDIINPEDVILIRRTG 167
>AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex
determiner protein.
Length = 410
Score = 21.4 bits (43), Expect = 5.9
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = -3
Query: 524 DIFRDLSQEDKEMTIKFKKRTKNPKTAHVIVQVG 423
+I RDL + T++ K+ NP+ +I + G
Sbjct: 134 EIHRDLPGKSTTTTVEVKRDIINPEDVILIRRTG 167
>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
protein.
Length = 1308
Score = 21.0 bits (42), Expect = 7.9
Identities = 11/31 (35%), Positives = 12/31 (38%)
Frame = -1
Query: 277 TDAVTVEDRICARNAQTSSQGPNRSAATAHT 185
T V R+ A TSSQ P T T
Sbjct: 1267 TTGAAVYARVIAPTTITSSQSPGNQQQTIQT 1297
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,323
Number of Sequences: 438
Number of extensions: 3547
Number of successful extensions: 29
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14968302
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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