Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11b10
(386 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein L36|Schizosacc... 85 3e-18
SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein L36|Sch... 85 4e-18
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo... 27 0.78
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo... 27 0.78
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc... 27 0.78
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb... 27 1.0
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz... 26 2.4
SPAC21E11.06 |tif224||translation initiation factor eIF2B delta ... 25 3.1
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 25 3.1
SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|ch... 25 3.1
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo... 25 4.1
SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly sc... 25 4.1
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 25 4.1
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||... 25 5.5
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 24 9.6
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb... 24 9.6
SPCC1906.04 |wtf20||wtf element Wtf20|Schizosaccharomyces pombe|... 24 9.6
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S... 24 9.6
>SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein
L36|Schizosaccharomyces pombe|chr 3|||Manual
Length = 99
Score = 85.4 bits (202), Expect = 3e-18
Identities = 44/86 (51%), Positives = 59/86 (68%)
Frame = -2
Query: 283 KGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLK 104
K +T + + RP+R KG +K + FVR +VREV G A YE+R MEL++ S+DKRA K K
Sbjct: 13 KVLTKRQLPERPSRRKGQLSKRTSFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAK 72
Query: 103 RRLGTHIRAKRKREELSNVLAQMRKA 26
+RLGT RAK K EEL++V+ R A
Sbjct: 73 KRLGTLKRAKGKIEELTSVIQSSRLA 98
>SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein
L36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 99
Score = 85.0 bits (201), Expect = 4e-18
Identities = 44/86 (51%), Positives = 59/86 (68%)
Frame = -2
Query: 283 KGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLK 104
K +T + + RP+R KG +K + FVR +VREV G A YE+R MEL++ S+DKRA K K
Sbjct: 13 KTLTKRQLPERPSRRKGHLSKRTAFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAK 72
Query: 103 RRLGTHIRAKRKREELSNVLAQMRKA 26
+RLGT RAK K EEL++V+ R A
Sbjct: 73 KRLGTLKRAKGKIEELTSVIQSSRLA 98
>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 536
Score = 27.5 bits (58), Expect = 0.78
Identities = 23/105 (21%), Positives = 48/105 (45%), Gaps = 2/105 (1%)
Frame = -2
Query: 310 KTTKISAGRKGITDKAIRIR--PARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKV 137
K ++ ++ + + +R++ P L+ Q S+ R+L ++ Q EK+ EL++
Sbjct: 424 KQNVVNEAKRYLQETILRLQAIPYHLQVGQAWTSESERELEKK---KEQVEKKQEELMQT 480
Query: 136 SKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRKAAAQAHHLT 2
FL + +AKRK E+ +L+ + + H +T
Sbjct: 481 RIVLEEQVFLVENMIEDAKAKRKFSEVETLLSSLAPLHEEIHSIT 525
>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 27.5 bits (58), Expect = 0.78
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +2
Query: 8 VMSLGGCLPHLSEHVAKFFTLPLGADVCAQSSLQELQSTLV 130
V SL G L + A+FFT PL ++VCA + + + ++
Sbjct: 545 VKSLNGEYIALEKIEAQFFTSPLVSNVCAYADVNHAKPVVI 585
>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1576
Score = 27.5 bits (58), Expect = 0.78
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -2
Query: 187 VVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAK-RKREELSNVLAQMR 32
++ HA ++ L+VSKD KRR+ THI + +R LS V Q+R
Sbjct: 1119 LINHADILSSILDYLQVSKD-------KRRMATHILGQINQRLTLSQVRNQLR 1164
>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 990
Score = 27.1 bits (57), Expect = 1.0
Identities = 14/37 (37%), Positives = 26/37 (70%), Gaps = 3/37 (8%)
Frame = -1
Query: 197 STRSCRTRSI*EEGY---GVT*GVKRQACSEVLEATI 96
+TR+C T+S+ EEG+ V+ +KR+ +++L+A I
Sbjct: 928 ATRACLTQSLEEEGFPSRNVSNEIKRRFLTDLLKARI 964
>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 576
Score = 25.8 bits (54), Expect = 2.4
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Frame = -2
Query: 199 LVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRL----GTHIRAKRK 68
++RE +G + K + ++ K ALKF+ R+L H+R +R+
Sbjct: 35 IIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVERE 82
>SPAC21E11.06 |tif224||translation initiation factor eIF2B delta
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 25.4 bits (53), Expect = 3.1
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = -3
Query: 69 SVKNLATCSLR*GRQPPRLIT 7
SVKNL SL+ PPRLIT
Sbjct: 421 SVKNLKLLSLKYDVTPPRLIT 441
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 25.4 bits (53), Expect = 3.1
Identities = 13/39 (33%), Positives = 27/39 (69%)
Frame = -2
Query: 151 ELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQM 35
+LLK ++ + K K+RL +I K K+EE+++++A++
Sbjct: 75 QLLKENEGSISSK-KKKRLDKYIENKLKKEEVASLIAKL 112
>SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 388
Score = 25.4 bits (53), Expect = 3.1
Identities = 15/61 (24%), Positives = 30/61 (49%)
Frame = -2
Query: 193 REVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRKAAAQA 14
R+ + +Y K A L+K + ++R+++ ++R +AKR E + Q + Q
Sbjct: 303 RQAIWEKKYGKGANHLIKKATEERSIREERQRKYEERQAKRAARENAFTEHQTPQKPEQL 362
Query: 13 H 11
H
Sbjct: 363 H 363
>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 456
Score = 25.0 bits (52), Expect = 4.1
Identities = 8/22 (36%), Positives = 17/22 (77%)
Frame = +3
Query: 126 LSFDTLSNSIALFSY*ACPTTS 191
+S+D+LS+ +++ S+ CP T+
Sbjct: 79 MSYDSLSDDVSVLSFLDCPLTT 100
>SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly
scaffold protein Isu1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 192
Score = 25.0 bits (52), Expect = 4.1
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 253 RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 149
RPA L+ L+T SKFV + V Y K ++
Sbjct: 27 RPANLQFLKTNSSKFVPQVTAN-VSRRMYHKNVLD 60
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 25.0 bits (52), Expect = 4.1
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +3
Query: 138 TLSNSIALFSY*ACPTTSRTKSRTNLECF 224
T+++S LF+ A T+ TKS N+EC+
Sbjct: 850 TINHSRTLFATHAHQLTNLTKSFKNVECY 878
>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1101
Score = 24.6 bits (51), Expect = 5.5
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 275 DTLAASGYFSCFVAFSQAYCDFKTRSHDFG 364
D A + S F AFSQ Y + +S+DFG
Sbjct: 319 DLRLACCFESHFFAFSQHYPRYLEQSNDFG 348
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 23.8 bits (49), Expect = 9.6
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +2
Query: 17 LGGCLPHLSEHVAKFFTLPLGA-DVCAQSSLQELQSTLVF*HLK*LHSPLLILS 175
+GG + SEHV K F L V ++ ++ S + LK + S LL ++
Sbjct: 127 IGGLIAEQSEHVEKAFNLLRQVLSVALKAQKPDMDSPELLEFLKPIQSELLTIT 180
>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 490
Score = 23.8 bits (49), Expect = 9.6
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +1
Query: 82 GCVCPIVASRTSEHACLLT 138
GCVCP++ SE A +L+
Sbjct: 189 GCVCPLLIDLESEDADVLS 207
>SPCC1906.04 |wtf20||wtf element Wtf20|Schizosaccharomyces pombe|chr
3|||Manual
Length = 258
Score = 23.8 bits (49), Expect = 9.6
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = +2
Query: 266 FVCDTLAASGYFSCFVAFSQAYCDFKTRSH 355
F+ +T+ + V QAYCD++ R +
Sbjct: 211 FIAETVEPGSCSTDLVKRVQAYCDYEARQY 240
>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 23.8 bits (49), Expect = 9.6
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Frame = -2
Query: 316 GHKTTKISAGRKGITDKAIRIRPARLKGL------QTKHSKFV-RDLVREVVGHAQYEKR 158
G+ K S TDK I+P LKGL TK ++ + RDL+R V+G E +
Sbjct: 730 GNPVDKNSTSPSKSTDKLDPIKPVFLKGLFSVSTTSTKSTESIQRDLIR-VMGMLDIEYK 788
Query: 157 AME 149
++
Sbjct: 789 EIK 791
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,522,988
Number of Sequences: 5004
Number of extensions: 26967
Number of successful extensions: 80
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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