Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11b09
         (904 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   2.8  
SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase |S...    27   3.6  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    27   4.8  
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   8.4  

>SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 249

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = +2

Query: 269 LYNEAVGVYSLKRSRLTAWMKF---KRVPIGHVYLCKIM 376
           L NEA+ +YS  ++ +  WM F   ++ PI H+   K +
Sbjct: 133 LNNEALKLYSCAKAGICRWMAFHFLEQEPIDHINFTKFL 171


>SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -1

Query: 283 GLIIKVLILCDECCKKELRDYIKGENSFNVAFKNCESILCRR 158
           G+ + VL L         RDY+   N  +V+ K+C SIL R+
Sbjct: 145 GINVSVLTLNSNFYVPVYRDYLMALNINSVSKKSCVSILSRK 186


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1639

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 165  HKMLSQFLKATLNEFSPLI*SRSSFLQHSSHKINT 269
            HKML + L+ +  E   ++ S+  +L + SH+I T
Sbjct: 973  HKMLEEKLQESNIEAQRIVRSKMQYLSNMSHEIRT 1007


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = -1

Query: 565 ETFQRLRNKNLTTLNKIKYDSELLLHYL 482
           + ++    +NLT  N+++ D +  +HYL
Sbjct: 146 DVYEFFGGENLTLFNQVRVDCQCYIHYL 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,973,595
Number of Sequences: 5004
Number of extensions: 51137
Number of successful extensions: 146
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)