Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11b09
         (904 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF068721-5|AAC19259.1| 1475|Caenorhabditis elegans Holocentric c...    30   2.0  
AC006731-1|AAF60483.1| 4900|Caenorhabditis elegans Temporarily a...    29   4.5  
AC006604-1|AAF39751.1|  484|Caenorhabditis elegans Hypothetical ...    29   6.0  
AL132948-46|CAD31837.2|  473|Caenorhabditis elegans Hypothetical...    28   7.9  

>AF068721-5|AAC19259.1| 1475|Caenorhabditis elegans Holocentric
           chromosome bindingprotein protein 1 protein.
          Length = 1475

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 11/46 (23%), Positives = 26/46 (56%)
 Frame = -1

Query: 589 ISKKISTTETFQRLRNKNLTTLNKIKYDSELLLHYLYDDQQNKNSD 452
           + K+   +E  +R+R ++ TT   +KY+ EL+   + +D +   ++
Sbjct: 376 VEKEARFSEEMERIRTESQTTSESLKYEHELVRKMMIEDMEKLEAE 421


>AC006731-1|AAF60483.1| 4900|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 80 protein.
          Length = 4900

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -1

Query: 619 KKKTPTLLESISKKISTTETFQRLRNKNLTTLNKIKYDSELLLHYLY 479
           K +T  +L+S+  K+ TTE    +   +   +  I+YDS    HY++
Sbjct: 83  KDETKLILKSVEDKLETTEIEGNVPKIDENLIENIQYDSGDQEHYIW 129


>AC006604-1|AAF39751.1|  484|Caenorhabditis elegans Hypothetical
           protein C07F11.2 protein.
          Length = 484

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -1

Query: 208 NSFNVAFKNCESILCRRISFQTVLMTCAVLLLLFNVEKFSM 86
           N   V  + CE  LC  ++ +  + TC +L LLFN   F++
Sbjct: 364 NDLPVLKRACERYLCSELNSKKDIGTCLLLDLLFNSIVFNL 404


>AL132948-46|CAD31837.2|  473|Caenorhabditis elegans Hypothetical
           protein Y39B6A.27 protein.
          Length = 473

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
 Frame = -1

Query: 394 GASILAHYFAQVHVSNGYSFEFHPGSQPRTFQTIHTDGLIIKVLILC--DECCKKELRDY 221
           GA  +  Y   VH S  +     P SQP +    H+  LI  +   C   +CC   +R  
Sbjct: 323 GALAVCIYCCLVHASTPFEAPMRPTSQP-SLLISHSYPLIFIISFFCGMSDCCINSVRSV 381

Query: 220 I 218
           I
Sbjct: 382 I 382


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,706,362
Number of Sequences: 27780
Number of extensions: 296089
Number of successful extensions: 789
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2297313942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)