Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11b09
         (904 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         23   3.8  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    23   3.8  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    23   3.8  
AB264332-1|BAF44087.1|   58|Apis mellifera ecdysone-induced prot...    23   3.8  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   3.8  

>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 11/47 (23%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = -3

Query: 848 ILCNLVQ---NGEYDLNAIMFNCAEIKLNKGQMLFQTKIYRPDNNKT 717
           +L N +Q   N +++ + + F      +N  +++  T+   PDN++T
Sbjct: 380 VLSNKMQKMVNNDFNFDDVNFRIMNANVN--ELILNTRCENPDNDRT 424


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 11/47 (23%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = -3

Query: 848 ILCNLVQ---NGEYDLNAIMFNCAEIKLNKGQMLFQTKIYRPDNNKT 717
           +L N +Q   N +++ + + F      +N  +++  T+   PDN++T
Sbjct: 380 VLSNKMQKMVNNDFNFDDVNFRIMNANVN--ELILNTRCENPDNDRT 424


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 11/47 (23%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = -3

Query: 848 ILCNLVQ---NGEYDLNAIMFNCAEIKLNKGQMLFQTKIYRPDNNKT 717
           +L N +Q   N +++ + + F      +N  +++  T+   PDN++T
Sbjct: 380 VLSNKMQKMVNNDFNFDDVNFRIMNANVN--ELILNTRCENPDNDRT 424


>AB264332-1|BAF44087.1|   58|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 58

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -3

Query: 596 GIDFEENIDDGDVSAPKKQKLDNAEQ 519
           G   EE    GD+ +P  + LDN ++
Sbjct: 10  GSSAEEQQPSGDILSPSSEPLDNDKE 35


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -3

Query: 596 GIDFEENIDDGDVSAPKKQKLDNAEQ 519
           G   EE    GD+ +P  + LDN ++
Sbjct: 10  GSSAEEQQPSGDILSPSSEPLDNDKE 35


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,292
Number of Sequences: 438
Number of extensions: 3988
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29267238
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)