Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11b08
         (241 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P41678 Cluster: Capsid protein p24; n=14; Nucleopolyhed...   108   3e-23
UniRef50_Q8QLM2 Cluster: P24 capsid; n=4; Nucleopolyhedrovirus|R...    52   3e-06
UniRef50_Q0N3Z1 Cluster: P24; n=7; Nucleopolyhedrovirus|Rep: P24...    44   9e-04
UniRef50_Q77LW0 Cluster: P24capsid; n=5; Nucleopolyhedrovirus|Re...    41   0.006
UniRef50_Q9PYW3 Cluster: ORF80; n=2; Granulovirus|Rep: ORF80 - X...    35   0.40 
UniRef50_Q7T9V5 Cluster: P24-capsid; n=1; Adoxophyes orana granu...    35   0.40 
UniRef50_Q8JRZ6 Cluster: P24 capsid protein; n=1; Phthorimaea op...    33   1.2  
UniRef50_Q1BBH2 Cluster: Integrase, catalytic region; n=21; Acti...    32   2.8  
UniRef50_Q31JH2 Cluster: Putative uncharacterized protein; n=1; ...    31   3.7  
UniRef50_Q8A2T3 Cluster: Putative uncharacterized protein; n=1; ...    30   8.6  
UniRef50_A7PYF6 Cluster: Chromosome chr15 scaffold_37, whole gen...    30   8.6  

>UniRef50_P41678 Cluster: Capsid protein p24; n=14;
           Nucleopolyhedrovirus|Rep: Capsid protein p24 -
           Autographa californica nuclear polyhedrosis virus
           (AcMNPV)
          Length = 198

 Score =  108 bits (259), Expect = 3e-23
 Identities = 49/56 (87%), Positives = 53/56 (94%)
 Frame = -3

Query: 203 MKTDAQSTSNTHNFMYSPDNNLEVVIITNSDGDHDGYLELTAAAKIMSPFISNGGS 36
           M TDAQSTSNT NFMYSPD++LEVVIITNSDGDHDGYLELTAAAK+MSPF+SNG S
Sbjct: 1   MNTDAQSTSNTRNFMYSPDSSLEVVIITNSDGDHDGYLELTAAAKVMSPFLSNGSS 56


>UniRef50_Q8QLM2 Cluster: P24 capsid; n=4; Nucleopolyhedrovirus|Rep:
           P24 capsid - Mamestra configurata NPV-A
          Length = 228

 Score = 51.6 bits (118), Expect = 3e-06
 Identities = 24/42 (57%), Positives = 30/42 (71%)
 Frame = -3

Query: 164 FMYSPDNNLEVVIITNSDGDHDGYLELTAAAKIMSPFISNGG 39
           F Y  D  LEVVII N D D DGY+ELTAAAK+++P ++  G
Sbjct: 17  FQYD-DQTLEVVIIENGDDDRDGYIELTAAAKLLAPLVTIRG 57


>UniRef50_Q0N3Z1 Cluster: P24; n=7; Nucleopolyhedrovirus|Rep: P24 -
           Clanis bilineata nucleopolyhedrosis virus
          Length = 265

 Score = 43.6 bits (98), Expect = 9e-04
 Identities = 20/42 (47%), Positives = 27/42 (64%)
 Frame = -3

Query: 164 FMYSPDNNLEVVIITNSDGDHDGYLELTAAAKIMSPFISNGG 39
           F Y  D  +EV+II N D D DGY+EL  AA+I++P  +  G
Sbjct: 41  FKYDEDIVIEVLIIDNGDDDRDGYVELANAARIITPLTNVRG 82


>UniRef50_Q77LW0 Cluster: P24capsid; n=5; Nucleopolyhedrovirus|Rep:
           P24capsid - Helicoverpa armigera nucleopolyhedrovirus G4
          Length = 248

 Score = 40.7 bits (91), Expect = 0.006
 Identities = 18/57 (31%), Positives = 34/57 (59%)
 Frame = -3

Query: 209 GIMKTDAQSTSNTHNFMYSPDNNLEVVIITNSDGDHDGYLELTAAAKIMSPFISNGG 39
           G +     +T+    F Y  D  ++V I+ N++ D DG++ELTAA ++++P ++  G
Sbjct: 12  GTINDPIVNTNQQTQFQYDNDV-IDVFIVENNEDDRDGFVELTAAVRLLAPVVAIRG 67


>UniRef50_Q9PYW3 Cluster: ORF80; n=2; Granulovirus|Rep: ORF80 -
           Xestia c-nigrum granulosis virus (XnGV) (Xestia
           c-nigrumgranulovirus)
          Length = 182

 Score = 34.7 bits (76), Expect = 0.40
 Identities = 12/31 (38%), Positives = 24/31 (77%)
 Frame = -3

Query: 146 NNLEVVIITNSDGDHDGYLELTAAAKIMSPF 54
           N +EV I+TN +G  +G+ E+++ A+++SP+
Sbjct: 20  NPIEVFIVTNDNGSTNGFAEVSSVAQMLSPY 50


>UniRef50_Q7T9V5 Cluster: P24-capsid; n=1; Adoxophyes orana
           granulovirus|Rep: P24-capsid - Adoxophyes orana
           granulovirus (AoGV)
          Length = 156

 Score = 34.7 bits (76), Expect = 0.40
 Identities = 15/39 (38%), Positives = 26/39 (66%)
 Frame = -3

Query: 167 NFMYSPDNNLEVVIITNSDGDHDGYLELTAAAKIMSPFI 51
           +F YS    +EV I++N D   +GY E+ + A++++PFI
Sbjct: 2   SFDYST-GQIEVFIVSNDDNTINGYAEVNSVAQLLTPFI 39


>UniRef50_Q8JRZ6 Cluster: P24 capsid protein; n=1; Phthorimaea
           operculella granulovirus|Rep: P24 capsid protein -
           Phthorimaea operculella granulovirus
          Length = 167

 Score = 33.1 bits (72), Expect = 1.2
 Identities = 12/29 (41%), Positives = 21/29 (72%)
 Frame = -3

Query: 140 LEVVIITNSDGDHDGYLELTAAAKIMSPF 54
           +EV I++N D   DGY+E+ A + +++PF
Sbjct: 11  IEVFIVSNEDKQVDGYVEVNALSHLLAPF 39


>UniRef50_Q1BBH2 Cluster: Integrase, catalytic region; n=21;
           Actinomycetales|Rep: Integrase, catalytic region -
           Mycobacterium sp. (strain MCS)
          Length = 358

 Score = 31.9 bits (69), Expect = 2.8
 Identities = 19/51 (37%), Positives = 24/51 (47%)
 Frame = -2

Query: 210 RDYENGRPVDIEHAQLHVFSRQQSGGGHHYQFGRRSRWLFGTNRRRQNHVT 58
           R YE+  P  + H  +  F+    GGGH +     SR   G NRRR  H T
Sbjct: 150 RRYEHAHPGSLIHVDVTKFANIPDGGGHKF----LSREHGGRNRRRTAHRT 196


>UniRef50_Q31JH2 Cluster: Putative uncharacterized protein; n=1;
            Thiomicrospira crunogena XCL-2|Rep: Putative
            uncharacterized protein - Thiomicrospira crunogena
            (strain XCL-2)
          Length = 1597

 Score = 31.5 bits (68), Expect = 3.7
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -3

Query: 212  NGIMKTDAQSTSNTHNFMYSPDNNLEVVIITNSDGDHDGYLE 87
            NG     A+      +F+Y  DN  +V II N D + D Y+E
Sbjct: 1471 NGGDTATAEVNDAGDHFLYGLDNEDDVFIIENEDDEQDSYIE 1512


>UniRef50_Q8A2T3 Cluster: Putative uncharacterized protein; n=1;
           Bacteroides thetaiotaomicron|Rep: Putative
           uncharacterized protein - Bacteroides thetaiotaomicron
          Length = 310

 Score = 30.3 bits (65), Expect = 8.6
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = -3

Query: 218 YKNGIMKTDAQSTSNTHNFMYSPDNNLEVVIITNSDGDHD 99
           Y+N ++K  A STS   +F+ S     +++++  +DG+ D
Sbjct: 56  YENALLKVSAMSTSEQVSFLNSLSFKSQMILMQEADGELD 95


>UniRef50_A7PYF6 Cluster: Chromosome chr15 scaffold_37, whole genome
           shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
           chr15 scaffold_37, whole genome shotgun sequence - Vitis
           vinifera (Grape)
          Length = 270

 Score = 30.3 bits (65), Expect = 8.6
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = -3

Query: 215 KNGIMKTDAQSTSNTHNFMYSPDNNLEVVIITNSDGDHDGYLELTAAAKIMS 60
           K GI   D Q  + TH+F ++     +++   +SDG  DG L L    KI+S
Sbjct: 202 KGGITLRDLQRMAYTHDFTWTDKEMADMIHCFDSDG--DGKLSLEDFQKIVS 251


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 290,462,447
Number of Sequences: 1657284
Number of extensions: 5524710
Number of successful extensions: 13474
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 13259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13468
length of database: 575,637,011
effective HSP length: 58
effective length of database: 479,514,539
effective search space used: 10069805319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)