Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11b08
(241 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0169 - 1346281-1349188,1350069-1350184 27 2.1
01_06_1233 - 35594510-35594687,35594985-35595100,35595364-355954... 26 3.7
08_02_1102 + 24319569-24319917,24320120-24321496,24321819-243220... 26 4.9
05_07_0055 - 27374028-27374080,27374205-27374295,27374930-273754... 26 4.9
04_03_0875 - 20475201-20475415,20475682-20476247,20478253-20478269 26 4.9
03_04_0066 + 17003276-17004067 26 4.9
03_02_0521 - 9093932-9094252 26 4.9
11_04_0460 - 17955102-17955146,17955253-17955310,17955442-179555... 25 6.5
08_02_1040 - 23873354-23874509,23875645-23875796 25 6.5
01_07_0090 - 41003888-41004716,41005142-41005559,41007010-41007193 25 6.5
06_03_0858 + 25448807-25448815,25451253-25452038,25452956-25452991 25 8.5
01_07_0255 - 42322111-42322308,42322658-42322750,42323127-423233... 25 8.5
>06_01_0169 - 1346281-1349188,1350069-1350184
Length = 1007
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -3
Query: 230 LSGCYKNGIMKTDAQSTSNTHNFMYSPDNNLEVVII 123
+ C + IM+ S S NF+YS +N+ VI+
Sbjct: 493 VKSCRVHDIMRDIIVSISKEENFVYSTGDNVSTVIV 528
>01_06_1233 -
35594510-35594687,35594985-35595100,35595364-35595463,
35595536-35595603,35596940-35597071
Length = 197
Score = 26.2 bits (55), Expect = 3.7
Identities = 16/56 (28%), Positives = 23/56 (41%)
Frame = -3
Query: 209 GIMKTDAQSTSNTHNFMYSPDNNLEVVIITNSDGDHDGYLELTAAAKIMSPFISNG 42
G+MK +A TS + N I+ N + YL+L + M F S G
Sbjct: 93 GVMKNEAMGTSQGSTVLCYHYNFCHFYILENLSNRYSPYLQLMCWGRYMHYFQSFG 148
>08_02_1102 +
24319569-24319917,24320120-24321496,24321819-24322001,
24322147-24322460,24322515-24322631,24323057-24323313,
24323504-24323684,24323802-24324074,24324535-24324729
Length = 1081
Score = 25.8 bits (54), Expect = 4.9
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = -3
Query: 200 KTDAQSTSNTHNFMYSPDNNLEVVII 123
K+ S S+ +NF++SPD+N ++
Sbjct: 310 KSYITSPSDLNNFLFSPDSNFRQTVV 335
>05_07_0055 -
27374028-27374080,27374205-27374295,27374930-27375448,
27375544-27375779,27376363-27376846,27376993-27378282
Length = 890
Score = 25.8 bits (54), Expect = 4.9
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -1
Query: 82 PPPPKSCHLL 53
PPPP+ CHLL
Sbjct: 71 PPPPRRCHLL 80
>04_03_0875 - 20475201-20475415,20475682-20476247,20478253-20478269
Length = 265
Score = 25.8 bits (54), Expect = 4.9
Identities = 19/48 (39%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Frame = -2
Query: 153 SRQQSGGGHHYQFGRRSRWLFGTNRRRQNH-VTFY*QRRFXPCGPTRR 13
S SGGGH +R R F T RR V Y QR P P R
Sbjct: 150 SSNGSGGGHEPSKEQRHRQDFATTRRHGGRGVLQYLQRWVNPWIPALR 197
>03_04_0066 + 17003276-17004067
Length = 263
Score = 25.8 bits (54), Expect = 4.9
Identities = 16/65 (24%), Positives = 26/65 (40%)
Frame = -3
Query: 200 KTDAQSTSNTHNFMYSPDNNLEVVIITNSDGDHDGYLELTAAAKIMSPFISNGGSXRVDQ 21
K ++S T + Y+ D+NL + + +S G + AA + GG D
Sbjct: 103 KPPPAASSETTTYNYNDDDNLPKMQVPSSSSTSSGRASIDVAAAAATVHGGGGGRHDDDD 162
Query: 20 RGAIA 6
G A
Sbjct: 163 LGVDA 167
>03_02_0521 - 9093932-9094252
Length = 106
Score = 25.8 bits (54), Expect = 4.9
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = -3
Query: 239 RLFLSGCYKNGIMKTDAQSTSNTHNF--MYSPDNNLEVVIITNSDGDHDG 96
RL G K+G+ + A + ++ + M SP L V+I ++DG H G
Sbjct: 11 RLPRRGREKSGLPRKTASTLPSSPSLGPMSSPTRELPGVVILDNDGFHSG 60
>11_04_0460 -
17955102-17955146,17955253-17955310,17955442-17955593,
17955888-17955993,17956101-17956222,17956766-17956834,
17956969-17957214,17957331-17957373,17957449-17957520,
17957954-17958066,17958158-17958238,17958343-17958415,
17959413-17959519,17960410-17960514,17960684-17960974,
17961621-17961707,17961774-17961842,17961917-17961973,
17962057-17962155,17962223-17962312,17962395-17962511,
17964164-17964244,17964353-17964502,17964812-17964956,
17967359-17967510,17967647-17967784,17967838-17967914,
17968032-17968134
Length = 1015
Score = 25.4 bits (53), Expect = 6.5
Identities = 15/58 (25%), Positives = 30/58 (51%)
Frame = -3
Query: 197 TDAQSTSNTHNFMYSPDNNLEVVIITNSDGDHDGYLELTAAAKIMSPFISNGGSXRVD 24
+ +++ +T M SPD L+++++ N D+D + AA P + N G+ R +
Sbjct: 810 SSSKNKRSTAVVMSSPDCELDLLLLGNDGHDNDSRDNMLDAA---DPRMGNDGARRAN 864
>08_02_1040 - 23873354-23874509,23875645-23875796
Length = 435
Score = 25.4 bits (53), Expect = 6.5
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = -3
Query: 218 YKNGIMKTDAQSTSNTHNFMYSPDNNLEVVIITNSDGDH 102
Y G M+ D + + + + PD EV +I+ D DH
Sbjct: 145 YLIGRMQMDGEEIAVVSSPLVEPDTIAEVPVISMDDDDH 183
>01_07_0090 - 41003888-41004716,41005142-41005559,41007010-41007193
Length = 476
Score = 25.4 bits (53), Expect = 6.5
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 69 FGGGG*FQIAIVIAVRIGNDDHLQIVVGRIHEVVRVRCRLGV 194
+GGGG + ++ G D H +V R E VRV +GV
Sbjct: 412 YGGGGGAMTRAIGSLMHGGDQHAGVVDRRRGEGVRVVDYMGV 453
>06_03_0858 + 25448807-25448815,25451253-25452038,25452956-25452991
Length = 276
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = -2
Query: 195 GRPVDIEHAQLHVFSRQQSGGGHHYQFGRRSR 100
GR Q+H SR+ G HH Q ++R
Sbjct: 150 GRRAPSPSPQMHAASRRHHHGRHHQQVAPKAR 181
>01_07_0255 -
42322111-42322308,42322658-42322750,42323127-42323344,
42323476-42323642,42324097-42324207,42324267-42324409,
42324492-42324710,42324975-42325055,42325202-42325381,
42325971-42326301,42326775-42326888,42327036-42327127,
42327631-42328059
Length = 791
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = -1
Query: 121 PIRTAITMAIWN*PPPPKS-CHLLLATAV 38
P R + W PPPP H LL+TAV
Sbjct: 23 PFRRFLHSPSWRPPPPPPPRRHRLLSTAV 51
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,560,593
Number of Sequences: 37544
Number of extensions: 176981
Number of successful extensions: 426
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 426
length of database: 14,793,348
effective HSP length: 58
effective length of database: 12,615,796
effective search space used: 264931716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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