Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11b08
         (241 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY344831-1|AAR05802.1|  333|Anopheles gambiae ICHIT protein.           23   1.5  
AY344829-1|AAR05800.1|  334|Anopheles gambiae ICHIT protein.           23   1.5  
AY028785-1|AAK32959.1|  509|Anopheles gambiae cytochrome P450 pr...    23   2.0  
DQ219483-1|ABB29887.1|  961|Anopheles gambiae cryptochrome 2 pro...    22   3.4  
CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           21   4.5  
AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific tran...    21   4.5  
AY785360-1|AAV52864.1|  759|Anopheles gambiae male-specific tran...    21   4.5  
AY725820-1|AAU50568.1|  593|Anopheles gambiae fruitless female-s...    21   4.5  
AY725819-1|AAU50567.1|  569|Anopheles gambiae fruitless male-spe...    21   4.5  
Y09951-1|CAA71082.1|  107|Anopheles gambiae histone H2a protein.       21   7.9  
AY578811-1|AAT07316.1|  565|Anopheles gambiae thickveins protein.      21   7.9  

>AY344831-1|AAR05802.1|  333|Anopheles gambiae ICHIT protein.
          Length = 333

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
 Frame = -1

Query: 154 LPTTIWRWSSL--PIRTAITMAIWN*P 80
           +PTT   WS L  P  T  T  +W  P
Sbjct: 232 VPTTTTTWSDLPPPPPTTTTTTVWTDP 258


>AY344829-1|AAR05800.1|  334|Anopheles gambiae ICHIT protein.
          Length = 334

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
 Frame = -1

Query: 154 LPTTIWRWSSL--PIRTAITMAIWN*P 80
           +PTT   WS L  P  T  T  +W  P
Sbjct: 233 VPTTTTTWSDLPPPPPTTTTTTVWTDP 259


>AY028785-1|AAK32959.1|  509|Anopheles gambiae cytochrome P450
           protein.
          Length = 509

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +3

Query: 96  AIVIAVRIGNDDHLQIVVGRIHEVVRVRCRLGVR 197
           A+ + V++ +DD     +  +H+ V  R R GV+
Sbjct: 233 AVKLGVKVTDDDLEAFFMNLVHDTVEHRERNGVQ 266


>DQ219483-1|ABB29887.1|  961|Anopheles gambiae cryptochrome 2
           protein.
          Length = 961

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = -3

Query: 236 LFLSGCYKNGIMKTDAQSTSNTHNFMYSPDNNLEVVIITNSDGDHD 99
           +F  G  ++    T A + +N H+   + DN+ +   + N   D D
Sbjct: 745 VFYGGKREDENEDTKADNMNNNHSDQLTGDNSADERAVPNDADDDD 790


>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -2

Query: 141  SGGGHHYQFGRRSRW 97
            SGGGH    G  SRW
Sbjct: 1425 SGGGHTGPAGLISRW 1439


>AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific
           transcription factor FRU-MA protein.
          Length = 960

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -2

Query: 177 EHAQLHVFSRQQSGGGHHYQ 118
           EH QL    +QQ    HH Q
Sbjct: 237 EHEQLERLQQQQQQQTHHQQ 256


>AY785360-1|AAV52864.1|  759|Anopheles gambiae male-specific
           transcription factor FRU-MB protein.
          Length = 759

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -2

Query: 177 EHAQLHVFSRQQSGGGHHYQ 118
           EH QL    +QQ    HH Q
Sbjct: 237 EHEQLERLQQQQQQQTHHQQ 256


>AY725820-1|AAU50568.1|  593|Anopheles gambiae fruitless
           female-specific zinc-fingerC isoform protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -2

Query: 177 EHAQLHVFSRQQSGGGHHYQ 118
           EH QL    +QQ    HH Q
Sbjct: 189 EHEQLERLQQQQQQQTHHQQ 208


>AY725819-1|AAU50567.1|  569|Anopheles gambiae fruitless
           male-specific zinc-fingerC isoform protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -2

Query: 177 EHAQLHVFSRQQSGGGHHYQ 118
           EH QL    +QQ    HH Q
Sbjct: 237 EHEQLERLQQQQQQQTHHQQ 256


>Y09951-1|CAA71082.1|  107|Anopheles gambiae histone H2a protein.
          Length = 107

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 135 LQIVVGRIHEVVR 173
           LQ  VGRIH ++R
Sbjct: 8   LQFPVGRIHRLLR 20


>AY578811-1|AAT07316.1|  565|Anopheles gambiae thickveins protein.
          Length = 565

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 13  APRWSTRXEPPLLIKGDMILAA 78
           +PR +T  EPPL     M L A
Sbjct: 164 SPRTTTTPEPPLADPNSMHLFA 185


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 302,811
Number of Sequences: 2352
Number of extensions: 5980
Number of successful extensions: 17
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 563,979
effective HSP length: 53
effective length of database: 439,323
effective search space used: 11422398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)