Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11b08
         (241 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014134-806|AAX52648.1|  820|Drosophila melanogaster CG15624-PB...    27   2.6  
BT029586-1|ABL75645.1|  415|Drosophila melanogaster IP16932p pro...    27   3.5  
BT003533-1|AAO39537.1|  704|Drosophila melanogaster RE09535p pro...    27   3.5  
BT001800-1|AAN71555.1|  738|Drosophila melanogaster RH29074p pro...    27   3.5  
AE014134-1555|AAF52703.1|  666|Drosophila melanogaster CG9310-PC...    27   3.5  
AE014134-1554|AAN10680.1|  732|Drosophila melanogaster CG9310-PB...    27   3.5  
AE014134-1553|AAF52702.2|  704|Drosophila melanogaster CG9310-PA...    27   3.5  
L08502-1|AAA28310.1|  766|Drosophila melanogaster developmental ...    27   4.6  
L08501-1|AAA28723.1|  760|Drosophila melanogaster eyes absent I ...    27   4.6  
BT024207-1|ABC86269.1|  706|Drosophila melanogaster RE41071p pro...    27   4.6  
AY047539-1|AAK77271.1|  760|Drosophila melanogaster GH05272p pro...    27   4.6  
AE014296-1473|AAF50401.3|  706|Drosophila melanogaster CG6817-PA...    27   4.6  
AE014134-1110|AAF52400.1|  766|Drosophila melanogaster CG9554-PA...    27   4.6  
AE014134-1109|AAN10587.1|  760|Drosophila melanogaster CG9554-PB...    27   4.6  
DQ191320-1|ABB80265.1|  123|Drosophila melanogaster truncated p5...    26   6.1  
DQ191319-1|ABB80264.1|  495|Drosophila melanogaster p53 protein ...    26   6.1  
DQ191318-1|ABB80263.1|  495|Drosophila melanogaster p53 protein ...    26   6.1  
BT001357-1|AAN71112.1|  519|Drosophila melanogaster AT28346p pro...    26   6.1  
AE014298-397|AAN09076.1|  202|Drosophila melanogaster CG32797-PA...    26   6.1  
AE014297-3259|AAN13925.2|  495|Drosophila melanogaster CG33336-P...    26   6.1  

>AE014134-806|AAX52648.1|  820|Drosophila melanogaster CG15624-PB,
           isoform B protein.
          Length = 820

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -1

Query: 139 WRWSSLPIRTAITMAIWN*PPPPKSC 62
           WRW SL I  A   A W   P P++C
Sbjct: 32  WRWFSLSILKAAPAAEWK--PKPRNC 55


>BT029586-1|ABL75645.1|  415|Drosophila melanogaster IP16932p
           protein.
          Length = 415

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -3

Query: 191 AQSTSNTHNFMYSPDNNL 138
           A S SN +N M+SP+NNL
Sbjct: 103 ASSGSNNNNSMFSPNNNL 120


>BT003533-1|AAO39537.1|  704|Drosophila melanogaster RE09535p
           protein.
          Length = 704

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -3

Query: 191 AQSTSNTHNFMYSPDNNL 138
           A S SN +N M+SP+NNL
Sbjct: 99  ASSGSNNNNSMFSPNNNL 116


>BT001800-1|AAN71555.1|  738|Drosophila melanogaster RH29074p
           protein.
          Length = 738

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -3

Query: 191 AQSTSNTHNFMYSPDNNL 138
           A S SN +N M+SP+NNL
Sbjct: 133 ASSGSNNNNSMFSPNNNL 150


>AE014134-1555|AAF52703.1|  666|Drosophila melanogaster CG9310-PC,
           isoform C protein.
          Length = 666

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -3

Query: 191 AQSTSNTHNFMYSPDNNL 138
           A S SN +N M+SP+NNL
Sbjct: 61  ASSGSNNNNSMFSPNNNL 78


>AE014134-1554|AAN10680.1|  732|Drosophila melanogaster CG9310-PB,
           isoform B protein.
          Length = 732

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -3

Query: 191 AQSTSNTHNFMYSPDNNL 138
           A S SN +N M+SP+NNL
Sbjct: 127 ASSGSNNNNSMFSPNNNL 144


>AE014134-1553|AAF52702.2|  704|Drosophila melanogaster CG9310-PA,
           isoform A protein.
          Length = 704

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -3

Query: 191 AQSTSNTHNFMYSPDNNL 138
           A S SN +N M+SP+NNL
Sbjct: 99  ASSGSNNNNSMFSPNNNL 116


>L08502-1|AAA28310.1|  766|Drosophila melanogaster developmental
           protein eya II protein.
          Length = 766

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 19/54 (35%), Positives = 26/54 (48%)
 Frame = -3

Query: 197 TDAQSTSNTHNFMYSPDNNLEVVIITNSDGDHDGYLELTAAAKIMSPFISNGGS 36
           TD  ST+  H   +SP + L    I+ S G   G L   +AA   +   S+GGS
Sbjct: 391 TDTHSTTPVHQTTHSPHSPLP---ISPSTGSGIGPLGNVSAAAAAAALNSSGGS 441


>L08501-1|AAA28723.1|  760|Drosophila melanogaster eyes absent I
           protein.
          Length = 760

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 19/54 (35%), Positives = 26/54 (48%)
 Frame = -3

Query: 197 TDAQSTSNTHNFMYSPDNNLEVVIITNSDGDHDGYLELTAAAKIMSPFISNGGS 36
           TD  ST+  H   +SP + L    I+ S G   G L   +AA   +   S+GGS
Sbjct: 385 TDTHSTTPVHQTTHSPHSPLP---ISPSTGSGIGPLGNVSAAAAAAALNSSGGS 435


>BT024207-1|ABC86269.1|  706|Drosophila melanogaster RE41071p
           protein.
          Length = 706

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -3

Query: 134 VVIITNSDGDHDGYLELTAAAK-IMSPFISN 45
           V  + N  GDHDG  ++ AAA+ ++SP  +N
Sbjct: 429 VAELRNGVGDHDGSNDMAAAAESLISPLHTN 459


>AY047539-1|AAK77271.1|  760|Drosophila melanogaster GH05272p
           protein.
          Length = 760

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 19/54 (35%), Positives = 26/54 (48%)
 Frame = -3

Query: 197 TDAQSTSNTHNFMYSPDNNLEVVIITNSDGDHDGYLELTAAAKIMSPFISNGGS 36
           TD  ST+  H   +SP + L    I+ S G   G L   +AA   +   S+GGS
Sbjct: 385 TDTHSTTPVHQTTHSPHSPLP---ISPSTGSGIGPLGNVSAAAAAAALNSSGGS 435


>AE014296-1473|AAF50401.3|  706|Drosophila melanogaster CG6817-PA
           protein.
          Length = 706

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -3

Query: 134 VVIITNSDGDHDGYLELTAAAK-IMSPFISN 45
           V  + N  GDHDG  ++ AAA+ ++SP  +N
Sbjct: 429 VAELRNGVGDHDGSNDMAAAAESLISPLHTN 459


>AE014134-1110|AAF52400.1|  766|Drosophila melanogaster CG9554-PA,
           isoform A protein.
          Length = 766

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 19/54 (35%), Positives = 26/54 (48%)
 Frame = -3

Query: 197 TDAQSTSNTHNFMYSPDNNLEVVIITNSDGDHDGYLELTAAAKIMSPFISNGGS 36
           TD  ST+  H   +SP + L    I+ S G   G L   +AA   +   S+GGS
Sbjct: 391 TDTHSTTPVHQTTHSPHSPLP---ISPSTGSGIGPLGNVSAAAAAAALNSSGGS 441


>AE014134-1109|AAN10587.1|  760|Drosophila melanogaster CG9554-PB,
           isoform B protein.
          Length = 760

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 19/54 (35%), Positives = 26/54 (48%)
 Frame = -3

Query: 197 TDAQSTSNTHNFMYSPDNNLEVVIITNSDGDHDGYLELTAAAKIMSPFISNGGS 36
           TD  ST+  H   +SP + L    I+ S G   G L   +AA   +   S+GGS
Sbjct: 385 TDTHSTTPVHQTTHSPHSPLP---ISPSTGSGIGPLGNVSAAAAAAALNSSGGS 435


>DQ191320-1|ABB80265.1|  123|Drosophila melanogaster truncated p53
           splice variant isoformprotein.
          Length = 123

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 191 AQSTSNTHNFMYSPDNNLEVVIITNSDGDH 102
           A   +NT+N M    NNLE++   NSDG++
Sbjct: 82  AYGGNNTNNMMQFT-NNLEILANNNSDGNN 110


>DQ191319-1|ABB80264.1|  495|Drosophila melanogaster p53 protein
           long form variant 2 protein.
          Length = 495

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 191 AQSTSNTHNFMYSPDNNLEVVIITNSDGDH 102
           A   +NT+N M    NNLE++   NSDG++
Sbjct: 82  AYGGNNTNNMMQFT-NNLEILANNNSDGNN 110


>DQ191318-1|ABB80263.1|  495|Drosophila melanogaster p53 protein
           long form variant 1 protein.
          Length = 495

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 191 AQSTSNTHNFMYSPDNNLEVVIITNSDGDH 102
           A   +NT+N M    NNLE++   NSDG++
Sbjct: 82  AYGGNNTNNMMQFT-NNLEILANNNSDGNN 110


>BT001357-1|AAN71112.1|  519|Drosophila melanogaster AT28346p
           protein.
          Length = 519

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 191 AQSTSNTHNFMYSPDNNLEVVIITNSDGDH 102
           A   +NT+N M    NNLE++   NSDG++
Sbjct: 106 AYGGNNTNNMMQFT-NNLEILANNNSDGNN 134


>AE014298-397|AAN09076.1|  202|Drosophila melanogaster CG32797-PA
           protein.
          Length = 202

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 138 GGGHHYQFGRRSRWLFGTNRRRQNHVTFY 52
           GGG++ +  R  RW  G  + RQ+ VT +
Sbjct: 47  GGGNNKRRNRAGRWHQGARQLRQSPVTIW 75


>AE014297-3259|AAN13925.2|  495|Drosophila melanogaster CG33336-PB,
           isoform B protein.
          Length = 495

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 191 AQSTSNTHNFMYSPDNNLEVVIITNSDGDH 102
           A   +NT+N M    NNLE++   NSDG++
Sbjct: 82  AYGGNNTNNMMQFT-NNLEILANNNSDGNN 110


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,418,098
Number of Sequences: 53049
Number of extensions: 269147
Number of successful extensions: 663
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 24,988,368
effective HSP length: 59
effective length of database: 21,858,477
effective search space used: 437169540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)