Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11b08
(241 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53181-11|AAM29689.1| 315|Caenorhabditis elegans Hypothetical p... 29 0.33
U53181-10|AAA93489.2| 334|Caenorhabditis elegans Hypothetical p... 29 0.33
U29535-11|AAK31456.1| 947|Caenorhabditis elegans Hypothetical p... 29 0.58
AF036698-1|AAB88352.1| 425|Caenorhabditis elegans Hypothetical ... 29 0.58
AC024794-6|AAK68493.2| 425|Caenorhabditis elegans Hypothetical ... 29 0.58
U80848-3|AAB37988.1| 2098|Caenorhabditis elegans Heavy chain, un... 28 0.77
AY273823-1|AAQ01772.1| 1040|Caenorhabditis elegans VAB-19 protein. 26 3.1
AC006688-1|AAF39969.3| 1040|Caenorhabditis elegans Variable abno... 26 3.1
AC006680-10|AAK72297.2| 335|Caenorhabditis elegans Seven tm rec... 26 3.1
Z69634-7|CAA93453.2| 248|Caenorhabditis elegans Hypothetical pr... 26 4.1
U23527-3|AAC46573.3| 596|Caenorhabditis elegans Hypothetical pr... 26 4.1
AL110478-6|CAE17957.2| 952|Caenorhabditis elegans Hypothetical ... 26 4.1
AC006757-3|AAF60541.2| 916|Caenorhabditis elegans Hypothetical ... 26 4.1
AL032637-13|CAA21615.1| 709|Caenorhabditis elegans Hypothetical... 25 5.4
Z75532-1|CAA99809.1| 93|Caenorhabditis elegans Hypothetical pr... 25 7.2
U97190-1|AAB52366.2| 495|Caenorhabditis elegans Cop-9 signaloso... 25 7.2
U39472-4|AAK31389.2| 319|Caenorhabditis elegans Helix loop heli... 25 7.2
U39472-3|AAN39683.1| 320|Caenorhabditis elegans Helix loop heli... 25 7.2
U39472-2|AAN39684.1| 324|Caenorhabditis elegans Helix loop heli... 25 7.2
U28991-13|AAA68387.1| 281|Caenorhabditis elegans Hypothetical p... 25 7.2
M59940-2|AAA16290.1| 320|Caenorhabditis elegans CeMyoD, alterna... 25 7.2
M59940-1|AAA16289.1| 324|Caenorhabditis elegans CeMyoD protein. 25 7.2
AL032651-1|CAB60580.1| 681|Caenorhabditis elegans Hypothetical ... 25 7.2
AF100669-11|AAK39270.2| 737|Caenorhabditis elegans Dipeptidyl p... 25 7.2
Z93389-10|CAB07674.1| 417|Caenorhabditis elegans Hypothetical p... 25 9.5
Z93379-11|CAB07595.1| 417|Caenorhabditis elegans Hypothetical p... 25 9.5
Z81489-14|CAN86572.1| 420|Caenorhabditis elegans Hypothetical p... 25 9.5
Z81489-13|CAB04012.1| 426|Caenorhabditis elegans Hypothetical p... 25 9.5
Z81087-2|CAN86636.1| 420|Caenorhabditis elegans Hypothetical pr... 25 9.5
Z81087-1|CAB03122.1| 426|Caenorhabditis elegans Hypothetical pr... 25 9.5
Z75554-1|CAA99953.3| 681|Caenorhabditis elegans Hypothetical pr... 25 9.5
U40940-5|AAA81706.2| 465|Caenorhabditis elegans Hypothetical pr... 25 9.5
AC024757-8|AAF59454.2| 215|Caenorhabditis elegans Hypothetical ... 25 9.5
>U53181-11|AAM29689.1| 315|Caenorhabditis elegans Hypothetical
protein F36D4.5b protein.
Length = 315
Score = 29.5 bits (63), Expect = 0.33
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 207 DYENGRPVDIEHAQLHVFSRQQSGGGHHYQF 115
DY + V I H+ + VF + + GGH YQF
Sbjct: 25 DYASNIGVGIFHSGIEVFGVEYAYGGHPYQF 55
>U53181-10|AAA93489.2| 334|Caenorhabditis elegans Hypothetical
protein F36D4.5a protein.
Length = 334
Score = 29.5 bits (63), Expect = 0.33
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 207 DYENGRPVDIEHAQLHVFSRQQSGGGHHYQF 115
DY + V I H+ + VF + + GGH YQF
Sbjct: 44 DYASNIGVGIFHSGIEVFGVEYAYGGHPYQF 74
>U29535-11|AAK31456.1| 947|Caenorhabditis elegans Hypothetical
protein C25H3.11 protein.
Length = 947
Score = 28.7 bits (61), Expect = 0.58
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = -3
Query: 188 QSTSNTHNFMYSPDNNLEVVIITNSDG---DHDGYLELTAAAK 69
QST +T + +P N L VV +T S+G +H+ LE TA K
Sbjct: 382 QSTVSTDDSNTNPSNALAVVPVTTSNGASSNHNQSLESTAIMK 424
>AF036698-1|AAB88352.1| 425|Caenorhabditis elegans Hypothetical
protein B0273.3 protein.
Length = 425
Score = 28.7 bits (61), Expect = 0.58
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -2
Query: 192 RPVDIEHAQLHVFSRQQSGGGHHYQFGRRSRWLFGTNRRR 73
R +D+ H VF+R+ GG + G ++ L +RRR
Sbjct: 64 RQIDVSHISSMVFNREMDGGIERNRLGSQAILLDENSRRR 103
>AC024794-6|AAK68493.2| 425|Caenorhabditis elegans Hypothetical
protein Y48G1BM.1 protein.
Length = 425
Score = 28.7 bits (61), Expect = 0.58
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -2
Query: 192 RPVDIEHAQLHVFSRQQSGGGHHYQFGRRSRWLFGTNRRR 73
R +D+ H VF+R+ GG + G ++ L +RRR
Sbjct: 64 RQIDVSHISSMVFNREMDGGIERNRLGSQAILLDENSRRR 103
>U80848-3|AAB37988.1| 2098|Caenorhabditis elegans Heavy chain,
unconventional myosinprotein 6 protein.
Length = 2098
Score = 28.3 bits (60), Expect = 0.77
Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +1
Query: 127 MTTSRLLSGEYMKLCVFDVDWA-SVFIIPFL*QPDKNNL 240
+ T ++ GE + C+F + A +V+++P L +P KN L
Sbjct: 1518 LLTESVVKGENSRTCLFGLIRAENVYVLPTLVKPSKNTL 1556
>AY273823-1|AAQ01772.1| 1040|Caenorhabditis elegans VAB-19 protein.
Length = 1040
Score = 26.2 bits (55), Expect = 3.1
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -1
Query: 82 PPPPKSCHLLLATAV 38
PPPP+SCH+ +T +
Sbjct: 432 PPPPESCHVSTSTVL 446
>AC006688-1|AAF39969.3| 1040|Caenorhabditis elegans Variable
abnormal morphology protein19 protein.
Length = 1040
Score = 26.2 bits (55), Expect = 3.1
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -1
Query: 82 PPPPKSCHLLLATAV 38
PPPP+SCH+ +T +
Sbjct: 432 PPPPESCHVSTSTVL 446
>AC006680-10|AAK72297.2| 335|Caenorhabditis elegans Seven tm
receptor protein 41 protein.
Length = 335
Score = 26.2 bits (55), Expect = 3.1
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -3
Query: 164 FMYSPDNNLEVVIITNSDGDHDGYL 90
F+Y N+L ++ +T+ DG D YL
Sbjct: 143 FLYGVVNSLSILFLTSPDGFTDDYL 167
>Z69634-7|CAA93453.2| 248|Caenorhabditis elegans Hypothetical
protein B0001.4 protein.
Length = 248
Score = 25.8 bits (54), Expect = 4.1
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -2
Query: 201 ENGRPVDIEHAQLHVFSRQQS 139
++GR +DI H LH F R+ S
Sbjct: 38 QSGRQIDIVHLSLHSFYRELS 58
>U23527-3|AAC46573.3| 596|Caenorhabditis elegans Hypothetical
protein K09E2.2 protein.
Length = 596
Score = 25.8 bits (54), Expect = 4.1
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = -3
Query: 197 TDAQSTSNTHNFMYSPDNNLEV 132
TD +S + H+++ P+NNL +
Sbjct: 44 TDEKSANTVHSYVLDPENNLSL 65
>AL110478-6|CAE17957.2| 952|Caenorhabditis elegans Hypothetical
protein Y26D4A.14 protein.
Length = 952
Score = 25.8 bits (54), Expect = 4.1
Identities = 9/36 (25%), Positives = 19/36 (52%)
Frame = -3
Query: 218 YKNGIMKTDAQSTSNTHNFMYSPDNNLEVVIITNSD 111
++NG+ K D + T NFM + +++ T+ +
Sbjct: 786 FENGLSKKDIRHCFQTQNFMVDKKDKSNILVTTSDN 821
>AC006757-3|AAF60541.2| 916|Caenorhabditis elegans Hypothetical
protein Y40C7B.1 protein.
Length = 916
Score = 25.8 bits (54), Expect = 4.1
Identities = 9/36 (25%), Positives = 19/36 (52%)
Frame = -3
Query: 218 YKNGIMKTDAQSTSNTHNFMYSPDNNLEVVIITNSD 111
++NG+ K D + T NFM + +++ T+ +
Sbjct: 750 FENGLSKRDIRHCFQTQNFMVDKKDKSNILVTTSEN 785
>AL032637-13|CAA21615.1| 709|Caenorhabditis elegans Hypothetical
protein Y43F8C.14 protein.
Length = 709
Score = 25.4 bits (53), Expect = 5.4
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Frame = -1
Query: 136 RWSSLPIRTAITMAIW-----N*PPPPKSCHLLLATAVRXVWTNAAPSHK 2
R+S+LP+ I M I+ PP K+C LA VR + + +H+
Sbjct: 468 RFSNLPVDFTIGMEIYMMRVPEHRPPEKTCAAFLAQKVRNLLVPSNAAHR 517
>Z75532-1|CAA99809.1| 93|Caenorhabditis elegans Hypothetical
protein C54G10.1 protein.
Length = 93
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -2
Query: 198 NGRPVDIEHAQLHVFSRQQSGGGHHYQ 118
N P + HA+L +Q GGHH Q
Sbjct: 11 NYAPDQVIHARLLFMRMEQVPGGHHLQ 37
>U97190-1|AAB52366.2| 495|Caenorhabditis elegans Cop-9 signalosome
subunit protein 2 protein.
Length = 495
Score = 25.0 bits (52), Expect = 7.2
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = -1
Query: 112 TAITMAIWN*PPPPKSCHLLLATAVRXVWTNAAPS 8
T++T +I PP SCH L+ VW S
Sbjct: 450 TSVTSSILQGPPATSSCHQELSMDGLRVWAERIDS 484
>U39472-4|AAK31389.2| 319|Caenorhabditis elegans Helix loop helix
protein 1, isoformc protein.
Length = 319
Score = 25.0 bits (52), Expect = 7.2
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -3
Query: 212 NGIMKTDAQSTSNTHNFMYSPDNNLEVVIITNSDGDHD 99
NG D ++S+ + Y+P+N + +T+SD D D
Sbjct: 233 NGAPPHDYVTSSHFASSSYNPENMFDDDDLTDSDDDRD 270
>U39472-3|AAN39683.1| 320|Caenorhabditis elegans Helix loop helix
protein 1, isoforma protein.
Length = 320
Score = 25.0 bits (52), Expect = 7.2
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -3
Query: 212 NGIMKTDAQSTSNTHNFMYSPDNNLEVVIITNSDGDHD 99
NG D ++S+ + Y+P+N + +T+SD D D
Sbjct: 229 NGAPPHDYVTSSHFASSSYNPENMFDDDDLTDSDDDRD 266
>U39472-2|AAN39684.1| 324|Caenorhabditis elegans Helix loop helix
protein 1, isoformb protein.
Length = 324
Score = 25.0 bits (52), Expect = 7.2
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -3
Query: 212 NGIMKTDAQSTSNTHNFMYSPDNNLEVVIITNSDGDHD 99
NG D ++S+ + Y+P+N + +T+SD D D
Sbjct: 233 NGAPPHDYVTSSHFASSSYNPENMFDDDDLTDSDDDRD 270
>U28991-13|AAA68387.1| 281|Caenorhabditis elegans Hypothetical
protein F08F8.5 protein.
Length = 281
Score = 25.0 bits (52), Expect = 7.2
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = -2
Query: 174 HAQLHVFSRQQSGGGHHYQFGRRSRWLFGTNRRRQNHVTFY*QRRFXPC 28
H H F GGHH+ FG FG + ++ H +RRF C
Sbjct: 240 HRHHHPFGAFHGFGGHHHGFGHG----FGHHGFKRQHPF---ERRFGRC 281
>M59940-2|AAA16290.1| 320|Caenorhabditis elegans CeMyoD,
alternatively spliced productprotein.
Length = 320
Score = 25.0 bits (52), Expect = 7.2
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -3
Query: 212 NGIMKTDAQSTSNTHNFMYSPDNNLEVVIITNSDGDHD 99
NG D ++S+ + Y+P+N + +T+SD D D
Sbjct: 229 NGAPPHDYVTSSHFASSSYNPENMFDDDDLTDSDDDRD 266
>M59940-1|AAA16289.1| 324|Caenorhabditis elegans CeMyoD protein.
Length = 324
Score = 25.0 bits (52), Expect = 7.2
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -3
Query: 212 NGIMKTDAQSTSNTHNFMYSPDNNLEVVIITNSDGDHD 99
NG D ++S+ + Y+P+N + +T+SD D D
Sbjct: 233 NGAPPHDYVTSSHFASSSYNPENMFDDDDLTDSDDDRD 270
>AL032651-1|CAB60580.1| 681|Caenorhabditis elegans Hypothetical
protein Y6D1A.1 protein.
Length = 681
Score = 25.0 bits (52), Expect = 7.2
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = -2
Query: 213 KRDYENGRPVDIEHAQLHVFSRQQSGGGHHYQFGRRSRWLFGTNRRR 73
+ DYEN R D+ Q + SRQQ+ H + R +R GT+R++
Sbjct: 138 RSDYENYRQ-DLS-LQRSITSRQQNYHDHSGRGSRGARSSVGTSRQQ 182
>AF100669-11|AAK39270.2| 737|Caenorhabditis elegans Dipeptidyl
peptidase four (iv)family protein 5 protein.
Length = 737
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = -3
Query: 176 NTHNFMYSPDNNLEVVIITNSDGDHDGYLELTA 78
+ +SPD N V +DG H LE+ A
Sbjct: 301 SAEELQFSPDGNTLVWFQRAADGPHQAVLEMVA 333
>Z93389-10|CAB07674.1| 417|Caenorhabditis elegans Hypothetical
protein F21H7.10 protein.
Length = 417
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/32 (31%), Positives = 15/32 (46%)
Frame = +3
Query: 123 NDDHLQIVVGRIHEVVRVRCRLGVRFHNPVFI 218
N D+ + +H +V CR G FH P +
Sbjct: 331 NADYFPSRIKVMHSLVYALCRAGYTFHVPTHV 362
>Z93379-11|CAB07595.1| 417|Caenorhabditis elegans Hypothetical
protein F21H7.10 protein.
Length = 417
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/32 (31%), Positives = 15/32 (46%)
Frame = +3
Query: 123 NDDHLQIVVGRIHEVVRVRCRLGVRFHNPVFI 218
N D+ + +H +V CR G FH P +
Sbjct: 331 NADYFPSRIKVMHSLVYALCRAGYTFHVPTHV 362
>Z81489-14|CAN86572.1| 420|Caenorhabditis elegans Hypothetical
protein F53E4.1b protein.
Length = 420
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 71 KIMSPFISNGGSXRVDQRG 15
++M +SNGGS R DQ G
Sbjct: 402 QVMPNVVSNGGSPRNDQAG 420
>Z81489-13|CAB04012.1| 426|Caenorhabditis elegans Hypothetical
protein F53E4.1a protein.
Length = 426
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 71 KIMSPFISNGGSXRVDQRG 15
++M +SNGGS R DQ G
Sbjct: 408 QVMPNVVSNGGSPRNDQAG 426
>Z81087-2|CAN86636.1| 420|Caenorhabditis elegans Hypothetical
protein F53E4.1b protein.
Length = 420
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 71 KIMSPFISNGGSXRVDQRG 15
++M +SNGGS R DQ G
Sbjct: 402 QVMPNVVSNGGSPRNDQAG 420
>Z81087-1|CAB03122.1| 426|Caenorhabditis elegans Hypothetical
protein F53E4.1a protein.
Length = 426
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 71 KIMSPFISNGGSXRVDQRG 15
++M +SNGGS R DQ G
Sbjct: 408 QVMPNVVSNGGSPRNDQAG 426
>Z75554-1|CAA99953.3| 681|Caenorhabditis elegans Hypothetical
protein ZC455.1 protein.
Length = 681
Score = 24.6 bits (51), Expect = 9.5
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -1
Query: 142 IWRWSSLPIRTAITMAIWN*PPPPKS 65
++RWS+ PI+ + W PP +S
Sbjct: 3 VFRWSATPIKMVGSQDSWGTPPHYRS 28
>U40940-5|AAA81706.2| 465|Caenorhabditis elegans Hypothetical
protein T03G6.3 protein.
Length = 465
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/37 (29%), Positives = 17/37 (45%)
Frame = -2
Query: 207 DYENGRPVDIEHAQLHVFSRQQSGGGHHYQFGRRSRW 97
DY + V H+ + VF+ + G HY+F W
Sbjct: 266 DYSLVKKVVNSHSMIMVFTNPEDEGTVHYEFSVCEVW 302
>AC024757-8|AAF59454.2| 215|Caenorhabditis elegans Hypothetical
protein Y37E11AL.2 protein.
Length = 215
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = -3
Query: 188 QSTSNTHNFMYSPDNNLEVVIITNSDGDHDGYLELTA 78
Q + TH ++ PD V I+ HD E TA
Sbjct: 103 QPRARTHGHLFVPDPPTPCVKISEDGNQHDAPKEKTA 139
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,509,701
Number of Sequences: 27780
Number of extensions: 123503
Number of successful extensions: 305
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 305
length of database: 12,740,198
effective HSP length: 59
effective length of database: 11,101,178
effective search space used: 222023560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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