Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11b08
         (241 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   0.40 
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   2.1  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    20   4.9  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    20   4.9  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    19   8.5  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           19   8.5  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           19   8.5  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.4 bits (48), Expect = 0.40
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = -3

Query: 215 KNGIMKTDAQSTSNTHNFMYSPDNNLEVVIITNSD 111
           K  ++    Q+  +T+  +Y  DN   ++I  N+D
Sbjct: 184 KGELVSLTVQAMDSTNTMVYMVDNKNTLIIYQNAD 218


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.0 bits (42), Expect = 2.1
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -3

Query: 215 KNGIMKTDAQSTSNTHNFMYSPDNNLEVV 129
           +NGI   D  +  N + F+   +NN  +V
Sbjct: 318 RNGIACWDTNTELNPNTFILVAENNTTMV 346


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 19.8 bits (39), Expect = 4.9
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 141 SGGGHHYQFGRR 106
           SGG +H+  GRR
Sbjct: 264 SGGTNHWDSGRR 275


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 19.8 bits (39), Expect = 4.9
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -3

Query: 149 DNNLEVVIITNSDGDHDGYLE 87
           D N EV + T +   H G +E
Sbjct: 122 DGNFEVTLATKATIYHQGLVE 142


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 19.0 bits (37), Expect = 8.5
 Identities = 10/48 (20%), Positives = 23/48 (47%)
 Frame = -3

Query: 203 MKTDAQSTSNTHNFMYSPDNNLEVVIITNSDGDHDGYLELTAAAKIMS 60
           +K ++  T    + MY+ +   E+V +++S+   D    L     ++S
Sbjct: 187 IKLNSLDTEQILDDMYNNNTEWEIVHMSHSESTIDSKFGLGFTTDLLS 234


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 19.0 bits (37), Expect = 8.5
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = -2

Query: 153 SRQQSGGGHHYQFGRRSRWLF 91
           S   S  GH    GRR R+ F
Sbjct: 40  SASNSVHGHREGLGRRHRYNF 60


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 19.0 bits (37), Expect = 8.5
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = -2

Query: 153 SRQQSGGGHHYQFGRRSRWLF 91
           S   S  GH    GRR R+ F
Sbjct: 41  SASNSVHGHREGLGRRHRYNF 61


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,688
Number of Sequences: 438
Number of extensions: 1484
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4024224
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)