Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11b05
         (861 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ...    31   0.21 
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    30   0.37 
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ...    26   6.0  
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    26   7.9  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    26   7.9  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    26   7.9  

>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
           Str2 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 31.1 bits (67), Expect = 0.21
 Identities = 14/30 (46%), Positives = 22/30 (73%)
 Frame = -1

Query: 777 DASLLFSCIILIFNTYTSKFLFSYFLTNFI 688
           D ++L SC+ LIF  + S ++FS FLT+F+
Sbjct: 349 DRTILGSCV-LIFTYFMSYYIFSNFLTSFL 377


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 30.3 bits (65), Expect = 0.37
 Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = +3

Query: 396  LKNYIPFIFFVFKIFLDVKSCLPIFYQMVLVNTNETARYLNN-KLKENNVQHQINYNPLL 572
            + N+ PF+       L+VK+ LPI   + +++ ++   +++N  + E    H IN + +L
Sbjct: 2027 ISNHYPFMHITISALLEVKNLLPIDLNIRIIDKDQEGVWMSNVGIGECAYVHSINISHVL 2086


>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 637 DVFRLKNYSMKEFEERINKI 696
           +V RLKN   KE EE++N++
Sbjct: 393 EVNRLKNLKRKELEEKLNQV 412


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/42 (26%), Positives = 18/42 (42%)
 Frame = +3

Query: 432 KIFLDVKSCLPIFYQMVLVNTNETARYLNNKLKENNVQHQIN 557
           +I L V    P       +     A+Y N K+K +N+   +N
Sbjct: 423 EIVLQVLESFPAAVSFSTITNTIQAKYSNRKIKNSNITRSLN 464


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = -1

Query: 789  SFELDASLLFSCIILIFNTYTSKFLFSYFLTNFIYPFF 676
            ++E  A++L++C  L+ N    +  +   L ++ YP+F
Sbjct: 1557 NYECFAAILYTCYHLLRNDLVMEISWRKGLQDYAYPYF 1594


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +3

Query: 483 LVNTNETARYLNNKLKENNVQHQINYNPLLQIYF 584
           L +   + RYL + LK+NN Q  I+ NPLL   F
Sbjct: 792 LEDIQNSHRYLCS-LKKNNSQKDIHRNPLLSHVF 824


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,031,413
Number of Sequences: 5004
Number of extensions: 58537
Number of successful extensions: 131
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)