Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11b05
         (861 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0293 + 19212963-19212965,19213900-19214235,19214658-192148...    28   8.3  
06_03_0291 + 19198302-19198333,19199218-19199734,19200171-192003...    28   8.3  

>06_03_0293 +
           19212963-19212965,19213900-19214235,19214658-19214870,
           19216134-19216408,19216504-19216615,19217181-19217417,
           19217445-19217462
          Length = 397

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 8/70 (11%)
 Frame = +3

Query: 411 PFIFFVFKIFLDVKSCL------PIFYQMVLVNTNETARYLNNKLK--ENNVQHQINYNP 566
           PF+    KIF  V SC+      P+F+ + ++N N T  YL+ KL+   + ++   +   
Sbjct: 3   PFLQSWNKIF--VLSCIFAVSVDPLFFYIPVINENNTCWYLDKKLEITASVLRFFTDIFY 60

Query: 567 LLQIYFQFIT 596
           +L I FQF T
Sbjct: 61  ILHIIFQFRT 70


>06_03_0291 +
           19198302-19198333,19199218-19199734,19200171-19200383,
           19201067-19201111,19201671-19201945,19202041-19202152,
           19202453-19202539,19202727-19202963,19204127-19204825
          Length = 738

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 8/70 (11%)
 Frame = +3

Query: 411 PFIFFVFKIFLDVKSCL------PIFYQMVLVNTNETARYLNNKLK--ENNVQHQINYNP 566
           PF+    KIF  V SC+      P+F+ + ++N N T  YL+ KL+   + ++   +   
Sbjct: 73  PFLQSWNKIF--VLSCIFAVSVDPLFFYIPVINDNNTCWYLDKKLEITASVLRFFTDIFY 130

Query: 567 LLQIYFQFIT 596
           +L I FQF T
Sbjct: 131 ILHIIFQFRT 140


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,021,205
Number of Sequences: 37544
Number of extensions: 267330
Number of successful extensions: 421
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)