Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11b05
         (861 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    23   4.8  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    23   4.8  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    23   4.8  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   4.8  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   6.3  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    22   6.3  

>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 9/25 (36%), Positives = 11/25 (44%)
 Frame = +3

Query: 489 NTNETARYLNNKLKENNVQHQINYN 563
           N N    Y NN    NN   ++ YN
Sbjct: 91  NNNYKYNYNNNNYNNNNYNKKLYYN 115


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 9/25 (36%), Positives = 11/25 (44%)
 Frame = +3

Query: 489 NTNETARYLNNKLKENNVQHQINYN 563
           N N    Y NN    NN   ++ YN
Sbjct: 91  NNNYKYNYNNNNYNNNNYNKKLYYN 115


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -3

Query: 118 ILGMVYYSVDFNSILDSCIVIDIVYC*KYLCIISNLIVI 2
           ILG V   + F S++ + +V+ I    K L   SNL VI
Sbjct: 20  ILGFVIGMLGFVSVMGNGMVVYIFLSTKSLRTPSNLFVI 58


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = +3

Query: 489 NTNETARYLNNKLKENNVQHQINYNPLLQIYFQFI 593
           N N    Y NN    NN  +  N N   ++Y+  I
Sbjct: 326 NNNYKYNYNNNNYNNNNYNNNYN-NNCKKLYYNII 359


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 501 TARYLNNKLKENNVQHQ 551
           TA ++ ++  ENNVQ+Q
Sbjct: 278 TAPFMKSQFGENNVQYQ 294


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
          finger domain-Z2 isoform protein.
          Length = 71

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = -2

Query: 68 LHCHRHSILLKIFVYH 21
          ++C R+S++  I+ YH
Sbjct: 44 VYCSRNSLMTHIYTYH 59


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,536
Number of Sequences: 438
Number of extensions: 4630
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)