Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11b03
         (826 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0490 - 6440176-6440448,6440785-6441074,6441156-6441304,644...    29   5.9  
03_05_0697 + 26888791-26888861,26890468-26890579,26891561-268917...    29   5.9  
03_06_0344 - 33276366-33276548,33277044-33277169,33277254-332773...    28   7.8  

>04_01_0490 -
           6440176-6440448,6440785-6441074,6441156-6441304,
           6441432-6441890,6441973-6442269,6442604-6443502,
           6443793-6443827,6443984-6444078,6444184-6444247,
           6446099-6446175,6446330-6446514
          Length = 940

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 20/62 (32%), Positives = 29/62 (46%)
 Frame = +1

Query: 457 KPIIIHTSNFESYDKPHCTWLYNSIIILIYHLIYNTS*TQHTFLCLSNKHDKHISSWILT 636
           KPI+ + S F  ++ P  T   N II+L   L+Y  +   +TF    N     + SW L 
Sbjct: 800 KPIV-YLSMFYYFNNPRSTITDNYIILLA--LVYCVTGIGYTFAICFNPGSAQLVSWSLA 856

Query: 637 EN 642
            N
Sbjct: 857 YN 858


>03_05_0697 + 26888791-26888861,26890468-26890579,26891561-26891757,
            26892215-26892266,26893530-26893795,26894007-26894229,
            26895154-26895327,26895408-26895485,26895566-26895817,
            26896138-26898204,26899477-26901322,26901474-26901574,
            26902179-26902535,26902681-26902799,26903558-26903559,
            26903630-26903662,26903709-26903841,26904285-26904537,
            26905688-26905912,26906401-26906466,26907373-26907471,
            26908528-26908545,26908546-26908893,26909878-26910354
          Length = 2522

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 472  HTSNFESYDKPHCTWLYNS 528
            HTSNF S ++  C W+ NS
Sbjct: 2089 HTSNFLSVERDDCLWMINS 2107


>03_06_0344 -
           33276366-33276548,33277044-33277169,33277254-33277322,
           33277401-33277505,33277595-33277633,33277717-33278016,
           33278093-33278182,33278271-33278312,33278433-33278516,
           33278762-33278947,33279218-33279403,33279663-33280025
          Length = 590

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 21/65 (32%), Positives = 30/65 (46%)
 Frame = -1

Query: 748 LVLYVF*KIKKQKLVKVFVEFQNCIAFYGKFYFKKDFQLKSKTIYVCRVCLKGTKRYVVF 569
           LVLY F K K+ K V VF    N + F+ +       Q++   I+  +   K  KR   F
Sbjct: 337 LVLYAFLKKKQNKKVMVFFSSCNSVKFHAELL--NFLQIECSDIHGKQ---KQQKRTTTF 391

Query: 568 KRYCK 554
             +CK
Sbjct: 392 FNFCK 396


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,470,857
Number of Sequences: 37544
Number of extensions: 267628
Number of successful extensions: 450
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)