Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11b03
         (826 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT003212-1|AAO24967.1|  527|Drosophila melanogaster RE18250p pro...    31   1.4  
AE014297-3631|AAF56340.1|  527|Drosophila melanogaster CG5807-PA...    31   1.4  
BT016136-1|AAV37021.1|  693|Drosophila melanogaster GH01148p pro...    31   2.5  
AE014134-1346|AAF52562.2| 1052|Drosophila melanogaster CG7134-PA...    31   2.5  
AF132157-1|AAD34745.1|  527|Drosophila melanogaster unknown prot...    30   3.3  

>BT003212-1|AAO24967.1|  527|Drosophila melanogaster RE18250p
           protein.
          Length = 527

 Score = 31.5 bits (68), Expect = 1.4
 Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +1

Query: 466 IIHTSNFESY-DKPHCTWLYNSIIILIYHLIYNTS*TQHTFLCLSNK 603
           II  +NF+   D     WL N  I+L+Y+L++ T+    T LCL+NK
Sbjct: 457 IIGITNFDLLGDFGAIEWLGNFQIVLLYNLVFGTT----TALCLANK 499


>AE014297-3631|AAF56340.1|  527|Drosophila melanogaster CG5807-PA
           protein.
          Length = 527

 Score = 31.5 bits (68), Expect = 1.4
 Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +1

Query: 466 IIHTSNFESY-DKPHCTWLYNSIIILIYHLIYNTS*TQHTFLCLSNK 603
           II  +NF+   D     WL N  I+L+Y+L++ T+    T LCL+NK
Sbjct: 457 IIGITNFDLLGDFGAIEWLGNFQIVLLYNLVFGTT----TALCLANK 499


>BT016136-1|AAV37021.1|  693|Drosophila melanogaster GH01148p
           protein.
          Length = 693

 Score = 30.7 bits (66), Expect = 2.5
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +2

Query: 116 KNLIVSHEF-INVQFLYANTYQNIAILTQCILIRTINLKKTNRNIQLIHANDSQSNY 283
           KN + +H F ++ +F+Y N Y +   L  C+L R      T  N +  HAN    +Y
Sbjct: 33  KNTVNTHYFSVDEEFIYENFYNDFGPLNICMLYRYCMKLNTKLNAK-CHANKKIVHY 88


>AE014134-1346|AAF52562.2| 1052|Drosophila melanogaster CG7134-PA
           protein.
          Length = 1052

 Score = 30.7 bits (66), Expect = 2.5
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +2

Query: 116 KNLIVSHEF-INVQFLYANTYQNIAILTQCILIRTINLKKTNRNIQLIHANDSQSNY 283
           KN + +H F ++ +F+Y N Y +   L  C+L R      T  N +  HAN    +Y
Sbjct: 33  KNTVNTHYFSVDEEFIYENFYNDFGPLNICMLYRYCMKLNTKLNAK-CHANKKIVHY 88


>AF132157-1|AAD34745.1|  527|Drosophila melanogaster unknown
           protein.
          Length = 527

 Score = 30.3 bits (65), Expect = 3.3
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = +1

Query: 514 WLYNSIIILIYHLIYNTS*TQHTFLCLSNK 603
           WL N  I+L+Y+L++ T+    T LCL+NK
Sbjct: 474 WLGNFQIVLLYNLVFGTT----TALCLANK 499


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,482,299
Number of Sequences: 53049
Number of extensions: 532863
Number of successful extensions: 1100
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1055
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1100
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3901127880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)