Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11b03
         (826 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70848-3|AAB09111.2|  399|Caenorhabditis elegans Hypothetical pr...    31   1.0  
Z69662-7|CAA93497.2| 1132|Caenorhabditis elegans Hypothetical pr...    29   4.0  

>U70848-3|AAB09111.2|  399|Caenorhabditis elegans Hypothetical
           protein C43G2.4 protein.
          Length = 399

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 17/65 (26%), Positives = 31/65 (47%)
 Frame = -3

Query: 422 KMKTERSHFRQSICYDWPPVLLICLYYLDTR*FHQNSFFYFNIYCSHSLTENHWRVLIEY 243
           ++K  R  FR+  C+DW   + + L Y         S+F+F ++    L  + +  L  +
Sbjct: 211 ELKAYRISFRRLYCHDW---VCVPLVYTQVAALATYSYFFFCLFGRQDLNHDDFYSLDAF 267

Query: 242 FCLFS 228
           F LF+
Sbjct: 268 FPLFT 272


>Z69662-7|CAA93497.2| 1132|Caenorhabditis elegans Hypothetical
           protein F56D5.9 protein.
          Length = 1132

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 365 VLLICLYYLDTR*FHQNSFFYFNIYCSHSLTENHWR 258
           +LLI LY +      +   FY N + S ++T  HWR
Sbjct: 745 ILLIILYSITPNGRRKLKRFYLNRFASEAVTNLHWR 780


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,885,580
Number of Sequences: 27780
Number of extensions: 320487
Number of successful extensions: 673
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2040452812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)