Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11b03
         (826 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    23   4.5  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   6.0  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   6.0  

>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
 Frame = +1

Query: 175 SEYCYFNTMYTYPYNKFEEN--KQKYSINTRQ 264
           + Y Y N  Y Y YN + +    + Y IN  Q
Sbjct: 320 NNYNYNNNNYKYNYNNYNKKLYYKNYIINIEQ 351


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +1

Query: 196 TMYTYPYNKFEEN 234
           TMY +P N+F+E+
Sbjct: 164 TMYRFPQNQFKES 176


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 537 FNLSFNLQYLLNTTYLFVPFK 599
           +N++F      NTT +FVP K
Sbjct: 213 YNMTFAQNGPFNTTTIFVPVK 233


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,661
Number of Sequences: 438
Number of extensions: 4372
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26338809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)