Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11b02
         (813 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    29   0.068
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    26   0.48 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    25   0.63 
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    23   2.5  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   3.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.4  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   3.4  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   4.4  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   4.4  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    22   5.9  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    22   5.9  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    22   5.9  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   7.8  

>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 28.7 bits (61), Expect = 0.068
 Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 7/72 (9%)
 Frame = -1

Query: 327 IKNDY--NNMHKSFKELQLKRISTEKALKSLNDD----YAKLAAKNARLSNENKVLSNKN 166
           +K+ Y  NN+H   KE     + T+ + K ++D+    +  +   +    NEN++L  +N
Sbjct: 282 VKSQYQANNVHYQGKE---NILWTQASAKGISDNGVLFFGLVGDTSLACWNENRLLDRRN 338

Query: 165 IELI-KHKNLLQ 133
           IE++ K+K  LQ
Sbjct: 339 IEVVAKNKETLQ 350


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 25.8 bits (54), Expect = 0.48
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +3

Query: 99  YIYMIVMLCTRFVINFCV*SIQYFYLIKPYFRYSIW 206
           +I   VM  T  ++N C  S+  +  IK   RY  W
Sbjct: 101 WIAFDVMCSTASILNLCAISLDRYIHIKDPLRYGRW 136


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 25.4 bits (53), Expect = 0.63
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +3

Query: 114 VMLCTRFVINFCV*SIQYFYLIKPYFRYSIWR 209
           V+ CT  ++N C+ S+  F  I    +Y + R
Sbjct: 122 VLSCTASILNLCMISVDRFCAITKPLKYGVKR 153


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 198 SIWRF*PQVLRNHH*AILVPFQLKFVLVAI 287
           ++WRF     +N   A L+P+ L  VL  I
Sbjct: 3   NVWRFPYLCYKNGGGAFLIPYFLTLVLAGI 32


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 195 NENKVLSNKNIELIKHKN 142
           NEN+ L  +NIE++   N
Sbjct: 328 NENRPLKRRNIEIVAKNN 345


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -1

Query: 273 RISTEKALKSLNDDYAKLAAKNARLSNENKVLSNKNIE 160
           +++ +KA      DY  L   N  +S E+  LS  NI+
Sbjct: 709 QVTWKKAAGDTPGDYTDLKLSNPDISVEDGTLSINNIQ 746


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -1

Query: 255 ALKSLNDDYAKLAAKNARLSNENKVLSNKNIELIKHKNLLQNEYTT 118
           A KS  D   +  +  + L+N   VL  ++  L  H NLL N Y+T
Sbjct: 369 ASKSHGDLELRQRSSKSLLAN---VLDLEDNALASHNNLLNNVYST 411


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -2

Query: 152 NTKIYYKTSTQHYNH 108
           +++I+Y TS Q+Y H
Sbjct: 199 SSEIFYTTSQQYYGH 213


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 114 VMLCTRFVINFCV*SIQYFYLIKPYFRY 197
           V+  T  ++N CV S+  ++ I   F Y
Sbjct: 127 VLFSTASILNLCVISLDRYWAITDPFTY 154


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +3

Query: 114 VMLCTRFVINFCV*SIQYFYLIKPYFRYSIWRF*PQVL 227
           V+ CT  ++N C  ++  ++ I     Y+  R   +VL
Sbjct: 117 VLCCTASILNLCAIALDRYWAITDPINYAQKRTLKRVL 154


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +3

Query: 114 VMLCTRFVINFCV*SIQYFYLIKPYFRYSIWRF*PQVL 227
           V+ CT  ++N C  ++  ++ I     Y+  R   +VL
Sbjct: 117 VLCCTASILNLCAIALDRYWAITDPINYAQKRTLKRVL 154


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +3

Query: 114 VMLCTRFVINFCV*SIQYFYLIKPYFRYSIWRF*PQVL 227
           V+ CT  ++N C  ++  ++ I     Y+  R   +VL
Sbjct: 117 VLCCTASILNLCAIALDRYWAITDPINYAQKRTLKRVL 154


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 177 IKPYFRYSIWR 209
           IKPY  Y +WR
Sbjct: 139 IKPYDEYYVWR 149


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,492
Number of Sequences: 438
Number of extensions: 3173
Number of successful extensions: 14
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)