Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11a24
(463 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein S24|Schizosac... 157 1e-39
SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein S24|Sc... 151 5e-38
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 28 0.60
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p... 28 0.80
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S... 28 0.80
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom... 27 1.1
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo... 26 2.4
SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|ch... 26 3.2
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 25 4.3
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 25 4.3
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 25 4.3
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 25 7.4
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb... 25 7.4
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22... 25 7.4
>SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein
S24|Schizosaccharomyces pombe|chr 2|||Manual
Length = 134
Score = 157 bits (380), Expect = 1e-39
Identities = 80/124 (64%), Positives = 94/124 (75%), Gaps = 1/124 (0%)
Frame = -2
Query: 387 MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFG 208
MSE TIRTRKFMTNRLL RKQMV D+LHPGK +SK EIREKLA+MYK + V FG
Sbjct: 1 MSEAV-TIRTRKFMTNRLLQRKQMVVDILHPGKANLSKNEIREKLAQMYKTDSECVQAFG 59
Query: 207 FKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEK-KRPTRKQRKERKNRMKKVR 31
+T+FGGG+STGFALIYD+ + KKFEP +RL R G E ++ R+QRK+RKNR KKV
Sbjct: 60 LRTHFGGGRSTGFALIYDSTESMKKFEPHYRLVRVGQAEPIQKVARQQRKQRKNRGKKVF 119
Query: 30 GTKK 19
GT K
Sbjct: 120 GTGK 123
>SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein
S24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 134
Score = 151 bits (366), Expect = 5e-38
Identities = 75/124 (60%), Positives = 92/124 (74%), Gaps = 1/124 (0%)
Frame = -2
Query: 387 MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFG 208
MSE TIRTRKFMTNRLL RKQMV D+LHPGK +SK ++REKL +MYK V FG
Sbjct: 1 MSEAV-TIRTRKFMTNRLLQRKQMVVDILHPGKANISKNDLREKLGQMYKTDASAVQAFG 59
Query: 207 FKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEK-KRPTRKQRKERKNRMKKVR 31
+T++GGG++TGFALIYD ++ KKFEP +RL R G E ++ R+QRK+RKNR KKV
Sbjct: 60 LRTHYGGGRTTGFALIYDDVEAMKKFEPHYRLVRVGHAEPIQKVARQQRKQRKNRGKKVF 119
Query: 30 GTKK 19
GT K
Sbjct: 120 GTGK 123
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 28.3 bits (60), Expect = 0.60
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +1
Query: 352 FASANSRCSFTHFELFSII 408
F+S SRCSFT FE+ SI+
Sbjct: 776 FSSVISRCSFTDFEINSIL 794
>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 27.9 bits (59), Expect = 0.80
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = -2
Query: 147 DLAKKFEPKHRLARHGLYEKKRPTR--KQRKERKNRMKKVRGTKKSK 13
D KK + +L ++KR R + +K K+ +KKV GTKK K
Sbjct: 155 DKLKKKSKRLKLDDSHTQKRKRKVRDKESKKSSKSGLKKVSGTKKVK 201
Score = 24.6 bits (51), Expect = 7.4
Identities = 9/35 (25%), Positives = 21/35 (60%)
Frame = -2
Query: 141 AKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 37
+KK + + + +K +K++KE+K+++KK
Sbjct: 125 SKKVKVRKTSGKESSKREKSKKKKEKKEKKDKLKK 159
>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 624
Score = 27.9 bits (59), Expect = 0.80
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 135 KFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 37
K+ P R G + +KR RK++ E+KN K
Sbjct: 539 KYRPNARKPLVGRHREKRQLRKEKPEKKNNSTK 571
>SPAC22A12.11 |dak1||dihydroxyacetone kinase
Dak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 27.5 bits (58), Expect = 1.1
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2
Query: 270 EIREKLAKMYKVTPDVVFVFGFKTNFGG 187
+++E LAK YK+ P +F F T+ G
Sbjct: 286 KVKEALAKEYKINPVRIFAGPFTTSLNG 313
>SPBC947.07 |||ribosome biogenesis protein
Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 26.2 bits (55), Expect = 2.4
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -2
Query: 93 EKKRPTRKQRKERKNRMKKVRGTKKSKVGAA 1
EKK +Q++ +N +KK R +KKSK G A
Sbjct: 194 EKKAMLMRQQRREEN-LKKRRESKKSKKGKA 223
>SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 244
Score = 25.8 bits (54), Expect = 3.2
Identities = 28/79 (35%), Positives = 37/79 (46%)
Frame = -1
Query: 322 ADGLRCLTSRKTNRQQDRDP*EARQNVQGYSRCSVRIRFQDKLRRWQVNWIRFDLRHTRS 143
A G +SR Q+DRD E R+N + R S R++D RR R D R+ R
Sbjct: 14 AQGRNYESSRSRGDQRDRDYREYRRNYRD-ERSS--RRYEDSQRRDYSPARRRD-RYERH 69
Query: 142 GQEVRTQAQVSSPRPVREE 86
+ VR + S RPV E
Sbjct: 70 RESVREE---SPRRPVEHE 85
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 25.4 bits (53), Expect = 4.3
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = -2
Query: 93 EKKRPTRKQRKERKNRMKKVRGTKKS 16
E+ +P ++ +E +NR+ ++RGT S
Sbjct: 90 ERLKPQDERTQEERNRVDEIRGTPMS 115
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 25.4 bits (53), Expect = 4.3
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = -2
Query: 90 KKRPTRKQRKERKNRMKKVRGTKKSK 13
+K+ +K++KE+K + +K KKS+
Sbjct: 449 RKKEAKKEKKEKKEKKEKKEKKKKSE 474
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 25.4 bits (53), Expect = 4.3
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -2
Query: 87 KRPTRKQRKERKNRMKKVRGTKKSKVG 7
K PT+K ++E+K + K K+ VG
Sbjct: 1121 KAPTKKSQREKKKELSKQVPISKTNVG 1147
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 24.6 bits (51), Expect = 7.4
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 188 PPKFVLKPNTNTTSGVTLYILASFS 262
PPK LKP+ +T+ ++ Y LA S
Sbjct: 818 PPKEPLKPSLDTSPELSKYSLAKLS 842
>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 440
Score = 24.6 bits (51), Expect = 7.4
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Frame = -2
Query: 135 KFEPKHRLARHGLYEKKRPT-----RKQRKERKNRMKKV 34
+F KH L RHG EKKR R+Q + R KKV
Sbjct: 58 EFGTKH-LRRHGRIEKKRRNWKGLFRRQSNWKDGRCKKV 95
>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 24.6 bits (51), Expect = 7.4
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +2
Query: 260 SRISVLLTVGFPGCKTSQTICLRANNL 340
SRI + ++G K Q++CLR N +
Sbjct: 48 SRIQSMASLGLERFKNLQSLCLRQNQI 74
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,003,009
Number of Sequences: 5004
Number of extensions: 41192
Number of successful extensions: 139
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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