Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11a24
(463 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0550 - 30151494-30151526,30151620-30151706,30152458-301526... 176 8e-45
02_02_0153 - 7258002-7258034,7258137-7258223,7258991-7259161,725... 172 1e-43
06_03_0440 + 20815528-20815653,20815742-20815912,20816501-208165... 136 1e-32
01_04_0061 + 15555096-15555428,15555768-15555775,15557117-15557495 30 1.0
02_04_0516 + 23593088-23593116,23593209-23593336,23593527-235937... 29 1.4
01_01_0801 - 6241710-6241869,6242522-6242689,6243202-6243269,624... 29 1.8
01_06_0355 + 28657833-28660665,28660762-28661126 29 2.4
01_01_0502 - 3688940-3689149,3689180-3689251,3690028-3690064,369... 29 2.4
07_01_0796 + 6265106-6265304,6265723-6265963,6266063-6266423 28 4.2
02_03_0347 - 17999780-18000592,18000656-18003019 28 4.2
01_06_1355 + 36610390-36610479,36611906-36612063,36612144-366125... 28 4.2
11_04_0350 - 16658497-16659015 27 5.6
02_01_0782 + 5827364-5827441,5827733-5827787,5828761-5828849,582... 27 5.6
01_05_0740 - 24809951-24810394,24810622-24810700,24811651-248118... 27 5.6
07_01_0566 + 4207894-4207974,4208090-4208144,4208671-4208759,420... 27 7.3
03_01_0078 - 635026-635252,635853-635934,636081-636089 27 7.3
12_01_0407 - 3219980-3221278 27 9.7
11_06_0081 + 19886848-19888050,19888243-19888896 27 9.7
09_03_0108 + 12421719-12421749,12422794-12422892,12423370-12423890 27 9.7
08_02_0672 - 19904353-19904839,19905646-19905704,19906137-199063... 27 9.7
06_03_0785 - 24563310-24565004,24565302-24565384,24565484-245660... 27 9.7
01_07_0042 + 40697153-40697407,40697479-40698081 27 9.7
>01_06_0550 -
30151494-30151526,30151620-30151706,30152458-30152628,
30152716-30152757,30152856-30152939
Length = 138
Score = 176 bits (428), Expect = 8e-45
Identities = 82/124 (66%), Positives = 101/124 (81%), Gaps = 1/124 (0%)
Frame = -2
Query: 369 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTP-DVVFVFGFKTNF 193
T+RTRKFMTNRLL+RKQ V +V+HPG+P VSK E++EKLAK+Y+V + +FVF F+T+F
Sbjct: 11 TLRTRKFMTNRLLSRKQFVLEVIHPGRPNVSKAELKEKLAKLYEVKDANCIFVFKFRTHF 70
Query: 192 GGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKSK 13
GGGKSTGF LIYD LD AKK+EPK+RL R+GL K +RKQ KERKNR KK+RG KK+K
Sbjct: 71 GGGKSTGFGLIYDNLDAAKKYEPKYRLIRNGLATKVEKSRKQMKERKNRAKKIRGVKKTK 130
Query: 12 VGAA 1
G A
Sbjct: 131 AGDA 134
>02_02_0153 -
7258002-7258034,7258137-7258223,7258991-7259161,
7259261-7259386
Length = 138
Score = 172 bits (419), Expect = 1e-43
Identities = 81/124 (65%), Positives = 100/124 (80%), Gaps = 1/124 (0%)
Frame = -2
Query: 369 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTP-DVVFVFGFKTNF 193
T+RTRKFMTNRLL+RKQ V +VLHPG+ VSK +++EKLAK+Y+V + +FVF F+T+F
Sbjct: 11 TLRTRKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVFKFRTHF 70
Query: 192 GGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKSK 13
GGGKSTGF LIYD LD AKK+EPK+RL R+GL K +RKQ KERKNR KK+RG KK+K
Sbjct: 71 GGGKSTGFGLIYDNLDAAKKYEPKYRLIRNGLATKVEKSRKQMKERKNRAKKIRGVKKTK 130
Query: 12 VGAA 1
G A
Sbjct: 131 AGDA 134
>06_03_0440 +
20815528-20815653,20815742-20815912,20816501-20816584,
20818831-20818917,20819044-20819076
Length = 166
Score = 136 bits (328), Expect = 1e-32
Identities = 78/152 (51%), Positives = 98/152 (64%), Gaps = 29/152 (19%)
Frame = -2
Query: 369 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVVFVFGFKTNF 193
T+RTRKFMTNRLL+RKQ V +VLHPG+ VSK +++EKLAK+Y+V + +FVF F+T+F
Sbjct: 11 TLRTRKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVFKFRTHF 70
Query: 192 GGGKSTGFALIYDTLDLAKKFEPKHRLAR-------HGLYEKK----------------- 85
GGGKSTGF LIYD LD AKK+EPK+RL R +G + +
Sbjct: 71 GGGKSTGFGLIYDNLDAAKKYEPKYRLIRVQLLSVGNGCFVSRGVLGIPCEVRFGNLNGL 130
Query: 84 -RPTRKQRK---ERKNRMKKVRGTKKSKVGAA 1
K RK ERKNR KK+RG KK+K G A
Sbjct: 131 ATKVEKSRKQMKERKNRAKKIRGVKKTKAGDA 162
>01_04_0061 + 15555096-15555428,15555768-15555775,15557117-15557495
Length = 239
Score = 29.9 bits (64), Expect = 1.0
Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = -2
Query: 198 NFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLY-EKKRPTRKQRKERKNR-MKKVRGT 25
NFGGG + L+Y L+ +++++ G Y +++ ERK + +++ +
Sbjct: 100 NFGGGAAVAVGLLYRVLE-ESSHNKRNKISESGAYTSSSNQEIEEKTERKEKCLERQKAA 158
Query: 24 KKSKVG 7
K+ K G
Sbjct: 159 KQRKKG 164
>02_04_0516 +
23593088-23593116,23593209-23593336,23593527-23593714,
23593861-23593919,23594997-23595345,23596081-23596333,
23596404-23597476
Length = 692
Score = 29.5 bits (63), Expect = 1.4
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = -2
Query: 93 EKKRPTRKQRKERKNRMKKVRGTKKSK 13
+KK+ +K++K++KN+ KK + KK K
Sbjct: 75 KKKKKKKKKKKKKKNKKKKKKKKKKKK 101
>01_01_0801 -
6241710-6241869,6242522-6242689,6243202-6243269,
6243372-6243593,6243676-6243774
Length = 238
Score = 29.1 bits (62), Expect = 1.8
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +1
Query: 238 LVHFGELLTDLGLADGWFSWM*DIANHLLARQQSVGHEFASANSR 372
LV FG+ +T+L ADG W +A+H + V F+ N+R
Sbjct: 5 LVLFGDSITELSFADG--GWGAALADHFARKADVVLRGFSGYNTR 47
>01_06_0355 + 28657833-28660665,28660762-28661126
Length = 1065
Score = 28.7 bits (61), Expect = 2.4
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = +2
Query: 209 PNTNTTSGVTLYILASFSRISVLLTVGFPGCKTSQTICLRANNLLVMNLRVRIVAVPSLI 388
PN S +TL L + + L +GFP CK + + + LL ++V +PS++
Sbjct: 670 PNGGVFSNITLQSLRGNTALCGLPRLGFPHCKNDHPLQGKKSRLL------KVVLIPSIL 723
>01_01_0502 -
3688940-3689149,3689180-3689251,3690028-3690064,
3691224-3691705
Length = 266
Score = 28.7 bits (61), Expect = 2.4
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -1
Query: 175 WIRFDLRHTRSGQEVRTQAQVSSPRPVREEEAHA 74
W R +R + G E T AQ+ PRPV + +HA
Sbjct: 155 WSRL-VRTSEHGDEQLTGAQLRPPRPVEADASHA 187
>07_01_0796 + 6265106-6265304,6265723-6265963,6266063-6266423
Length = 266
Score = 27.9 bits (59), Expect = 4.2
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -2
Query: 105 HGLYEKKRPTRKQRKERKNRMKKVRGTKKSK 13
H EKK+ ++K+RK R KK + KKSK
Sbjct: 224 HKKKEKKKEKSSEKKDRKERRKK-KDKKKSK 253
>02_03_0347 - 17999780-18000592,18000656-18003019
Length = 1058
Score = 27.9 bits (59), Expect = 4.2
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +1
Query: 295 WM*DIANHLLARQQSVGHEFASANSRCSFTHFELFSIIRRLHARVSAKTREKERV 459
W+ D+AN ++ QQ +G S + S T F RR R +A TR +
Sbjct: 105 WLDDVANLVMTAQQRLGAGGRSFAPKASGTATTGFMSSRRRARRAAAVTRRSSAI 159
>01_06_1355 +
36610390-36610479,36611906-36612063,36612144-36612523,
36612600-36613583,36614228-36614292,36614946-36615024,
36615480-36615529,36616595-36616781,36617922-36617957,
36619226-36619348,36619466-36620386,36620506-36620636
Length = 1067
Score = 27.9 bits (59), Expect = 4.2
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = +2
Query: 260 SRISVLLTVGFPGCKTSQTICLRANNLLVMNLRVRIVAVPSLI 388
+R+ V + +GF C+ QT C R+ +++ N+ A+P+ +
Sbjct: 364 TRMLVTVGLGFSSCQPEQTQCNRSAPVVLANMNNVSFALPNTV 406
>11_04_0350 - 16658497-16659015
Length = 172
Score = 27.5 bits (58), Expect = 5.6
Identities = 10/25 (40%), Positives = 20/25 (80%)
Frame = -2
Query: 93 EKKRPTRKQRKERKNRMKKVRGTKK 19
+KK+ +K++K++K + KKVR T++
Sbjct: 36 KKKKKKKKKKKKKKKKKKKVRYTQE 60
>02_01_0782 +
5827364-5827441,5827733-5827787,5828761-5828849,
5829167-5829191,5829645-5829683,5830316-5830433,
5830857-5831023,5831155-5831518,5831589-5831701,
5832185-5832310,5832436-5833339,5833694-5834036
Length = 806
Score = 27.5 bits (58), Expect = 5.6
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Frame = -2
Query: 156 DTLDLAKKFEPKHRLA-RHGLYEK-KRPTRKQ--RKERKNRMKKVRGTKKSK 13
D+ DL+ + + R RH +K KR RK+ R+ERK R + + +KSK
Sbjct: 260 DSSDLSSSSDDRRRRRKRHSKKDKHKRGKRKRDRRRERKRRKRDRKSKQKSK 311
>01_05_0740 - 24809951-24810394,24810622-24810700,24811651-24811809,
24812083-24812246,24812436-24812624,24813151-24813408,
24813463-24813951,24814062-24814262,24814368-24814639,
24814661-24814685,24814776-24814937,24815065-24815104,
24815244-24815353,24815812-24815898,24816013-24816507
Length = 1057
Score = 27.5 bits (58), Expect = 5.6
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -2
Query: 102 GLYEKKRPTRKQRKERKNRMKK 37
G+YE++R R+Q KER+ + K
Sbjct: 999 GVYERERNMRQQEKERRKQQSK 1020
>07_01_0566 +
4207894-4207974,4208090-4208144,4208671-4208759,
4209742-4209794,4209966-4210120,4210201-4210528,
4210618-4210730,4211394-4211538,4211951-4212259,
4212340-4212420,4212989-4213349
Length = 589
Score = 27.1 bits (57), Expect = 7.3
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = -2
Query: 153 TLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTK-KSK 13
+LD + + +H+ + +K R + + K +K + +K RGTK KSK
Sbjct: 207 SLDTSSSSDHRHKRRKSSKKDKHRSAKGKSKHKKTK-RKSRGTKRKSK 253
>03_01_0078 - 635026-635252,635853-635934,636081-636089
Length = 105
Score = 27.1 bits (57), Expect = 7.3
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Frame = -2
Query: 156 DTLDLAKKFEP--KHRLARHG-LYEKKRPTRKQRKERKNRMKKVRGTKKSKVG 7
DT+++AKK K + G E+K+P +K+ K+ + + +K K+ K G
Sbjct: 51 DTVEIAKKLRKIGKIDIVSVGPAKEEKKPEKKEEKKEEKKEEKKEEKKEEKKG 103
>12_01_0407 - 3219980-3221278
Length = 432
Score = 26.6 bits (56), Expect = 9.7
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +3
Query: 81 ASSSRTGRGELTCAWVRTSWPDRVCR 158
A+ S++G+G+ AW R W D + +
Sbjct: 90 ATDSQSGKGKKGAAWQRMKWTDSMVK 115
>11_06_0081 + 19886848-19888050,19888243-19888896
Length = 618
Score = 26.6 bits (56), Expect = 9.7
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = +2
Query: 140 ARSSVS*IKANPVDLPPPKFVLKPNTNTTSGVTLYILASFSRISVLLTV 286
++ VS +++ P PPP P TN + +Y+ + ++VL V
Sbjct: 252 SKPDVSQLRSPPPPPPPPPAAPAPTTNRKNHTGVYVGIGAAAVAVLAVV 300
>09_03_0108 + 12421719-12421749,12422794-12422892,12423370-12423890
Length = 216
Score = 26.6 bits (56), Expect = 9.7
Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = -1
Query: 235 YSRCSVRIR-FQDKLRRWQVNWI 170
+ RC VR+ F KLR W ++W+
Sbjct: 134 FLRCVVRVNNFPTKLRPWDLSWL 156
>08_02_0672 -
19904353-19904839,19905646-19905704,19906137-19906352,
19906845-19907422,19907506-19908180,19908263-19908653,
19909469-19909621,19909727-19909980,19911023-19911479
Length = 1089
Score = 26.6 bits (56), Expect = 9.7
Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Frame = -1
Query: 379 RNSDYSHSQIHDQ--QIVGAQADGLRCLTSRKTNRQQDRDP*EARQNVQGYSRCSVRIRF 206
R+SD ++ + D+ Q VG +D R T + +QD+ E + + + R
Sbjct: 761 RSSDRTNQRDRDRNDQDVGRTSDERREKTHDREKDKQDKPKSENKNILDAKQLIDMIPRT 820
Query: 205 QDKLRRWQVNWIRFD 161
+++L + +NW +D
Sbjct: 821 KEELFAYDINWAIYD 835
>06_03_0785 -
24563310-24565004,24565302-24565384,24565484-24566039,
24566397-24566513,24566565-24567131,24568632-24568702,
24569833-24569903,24570270-24570441,24571229-24572212,
24573128-24574808
Length = 1998
Score = 26.6 bits (56), Expect = 9.7
Identities = 25/102 (24%), Positives = 50/102 (49%)
Frame = -2
Query: 375 TATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTN 196
+++I +F+ R R+++V +L K E R K A+ + +V+ + G N
Sbjct: 169 SSSISIGEFVVGRQKEREELVHQLLEQS----DKPESRSKGARSTSL--EVITIVG---N 219
Query: 195 FGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRK 70
G GK+T LIY+ + F+ + + +++K R T++
Sbjct: 220 GGIGKTTLAQLIYNDKRIEDNFDMRAWVCVSHVFDKVRITKE 261
>01_07_0042 + 40697153-40697407,40697479-40698081
Length = 285
Score = 26.6 bits (56), Expect = 9.7
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +2
Query: 134 FLARSSVS*IKANPVDLPPPKFVLKPN-TNTTSGVTLYILAS 256
+ +SSV + + LPPP FV P +NT + + Y + S
Sbjct: 134 YRTQSSVRSVSSTCKPLPPPPFVRDPKFSNTRTTINSYAVVS 175
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,246,608
Number of Sequences: 37544
Number of extensions: 277668
Number of successful extensions: 894
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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