Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11a24
(463 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U12202-2|AAB08007.1| 130|Homo sapiens ribosomal protein S24 pro... 221 9e-58
U12202-1|AAB08006.1| 133|Homo sapiens ribosomal protein S24 pro... 221 9e-58
M31520-2|AAA36588.1| 133|Homo sapiens ribosomal protein S24 pro... 221 9e-58
BC071926-1|AAH71926.1| 130|Homo sapiens ribosomal protein S24 p... 221 9e-58
BC000523-1|AAH00523.1| 130|Homo sapiens ribosomal protein S24 p... 221 9e-58
AL512628-3|CAI16468.1| 133|Homo sapiens ribosomal protein S24 p... 221 9e-58
AL512628-2|CAI16467.1| 130|Homo sapiens ribosomal protein S24 p... 221 9e-58
BX537975-1|CAD97939.1| 132|Homo sapiens hypothetical protein pr... 219 3e-57
BC004173-1|AAH04173.1| 1500|Homo sapiens ANKRD17 protein protein. 35 0.16
BC048271-1|AAH48271.1| 611|Homo sapiens ZC3H11A protein protein. 33 0.36
AF271256-1|AAK58397.1| 42|Homo sapiens HBV preS1(21-47) bindin... 32 1.1
Z98886-1|CAI22750.1| 411|Homo sapiens adherens junction associa... 31 1.5
AY282806-1|AAP35025.1| 411|Homo sapiens transmembrane protein S... 31 1.5
AL391808-1|CAH72438.1| 411|Homo sapiens adherens junction assoc... 31 1.5
AL023586-1|CAI20566.1| 411|Homo sapiens adherens junction assoc... 31 1.5
AK127997-1|BAC87222.1| 148|Homo sapiens protein ( Homo sapiens ... 31 1.5
AF175409-1|AAD53278.1| 411|Homo sapiens unknown protein. 31 1.5
U91930-1|AAD03777.1| 1112|Homo sapiens AP-3 complex delta subuni... 31 1.9
AC005545-2|AAC34214.1| 1079|Homo sapiens AP-3 complex delta subu... 31 1.9
AB208804-1|BAD92041.1| 1284|Homo sapiens Adapter-related protein... 31 1.9
AK000295-1|BAA91063.1| 686|Homo sapiens protein ( Homo sapiens ... 31 2.5
BC126410-1|AAI26411.1| 516|Homo sapiens leucine rich repeat tra... 30 3.4
BC126408-1|AAI26409.1| 516|Homo sapiens leucine rich repeat tra... 30 3.4
AY182026-1|AAO67547.1| 516|Homo sapiens leucine-rich repeat tra... 30 3.4
AB014597-1|BAA31672.2| 2486|Homo sapiens KIAA0697 protein protein. 30 3.4
AB007876-1|BAA24846.2| 529|Homo sapiens KIAA0416 protein. 30 3.4
Z84487-2|CAI42674.1| 2492|Homo sapiens alpha thalassemia/mental ... 30 4.5
Z84487-1|CAI42675.1| 2454|Homo sapiens alpha thalassemia/mental ... 30 4.5
U97103-1|AAC51657.1| 2375|Homo sapiens X-linked nuclear protein ... 30 4.5
U75653-1|AAC51655.1| 2492|Homo sapiens zinc finger helicase prot... 30 4.5
U72938-1|AAB49971.2| 2454|Homo sapiens putative DNA dependent AT... 30 4.5
U72937-1|AAB49970.2| 2492|Homo sapiens putative DNA dependent AT... 30 4.5
U72936-1|AAB49969.1| 2288|Homo sapiens putative DNA dependent AT... 30 4.5
U72935-3|AAB40700.1| 2288|Homo sapiens putative DNA dependent AT... 30 4.5
U72935-2|AAB40699.1| 2337|Homo sapiens putative DNA dependent AT... 30 4.5
U72935-1|AAB40698.1| 2375|Homo sapiens putative DNA dependent AT... 30 4.5
U09820-1|AAC50069.1| 1641|Homo sapiens helicase II protein. 30 4.5
EF467914-1|ABO43036.1| 2492|Homo sapiens alpha thalassemia/menta... 30 4.5
AL121874-2|CAI40710.1| 2492|Homo sapiens alpha thalassemia/menta... 30 4.5
AL121874-1|CAB90351.2| 2454|Homo sapiens alpha thalassemia/menta... 30 4.5
AL109753-2|CAI43115.1| 2492|Homo sapiens alpha thalassemia/menta... 30 4.5
AL109753-1|CAI43116.1| 2454|Homo sapiens alpha thalassemia/menta... 30 4.5
AB231746-1|BAE17134.1| 567|Homo sapiens hypothetical protein pr... 30 4.5
AB209545-1|BAD92782.1| 1224|Homo sapiens transcriptional regulat... 30 4.5
AB208928-1|BAD92165.1| 1383|Homo sapiens transcriptional regulat... 30 4.5
AB102641-1|BAC81110.1| 2492|Homo sapiens ATRX protein. 30 4.5
BC130280-1|AAI30281.1| 1621|Homo sapiens ABCA8 protein protein. 29 5.9
AK025632-1|BAB15196.1| 720|Homo sapiens protein ( Homo sapiens ... 29 5.9
AB231747-1|BAE17135.1| 490|Homo sapiens hypothetical protein pr... 29 5.9
AB020629-1|BAA74845.2| 1591|Homo sapiens KIAA0822 protein protein. 29 5.9
BC127700-1|AAI27701.1| 520|Homo sapiens INSC protein protein. 29 7.8
AK025859-1|BAB15260.1| 460|Homo sapiens protein ( Homo sapiens ... 29 7.8
AB236159-1|BAE93464.1| 579|Homo sapiens Inscuteable long form p... 29 7.8
AB236158-1|BAE93463.1| 532|Homo sapiens Inscuteable short form ... 29 7.8
AB231745-1|BAE17133.1| 532|Homo sapiens hypothetical protein pr... 29 7.8
>U12202-2|AAB08007.1| 130|Homo sapiens ribosomal protein S24
protein.
Length = 130
Score = 221 bits (540), Expect = 9e-58
Identities = 103/124 (83%), Positives = 112/124 (90%)
Frame = -2
Query: 375 TATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTN 196
T TIRTRKFMTNRLL RKQMV DVLHPGK TV KTEIREKLAKMYK TPDV+FVFGF+T+
Sbjct: 4 TVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGFRTH 63
Query: 195 FGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKS 16
FGGGK+TGF +IYD+LD AKK EPKHRLARHGLYEKK+ +RKQRKERKNRMKKVRGT K+
Sbjct: 64 FGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGTAKA 123
Query: 15 KVGA 4
VGA
Sbjct: 124 NVGA 127
>U12202-1|AAB08006.1| 133|Homo sapiens ribosomal protein S24
protein.
Length = 133
Score = 221 bits (540), Expect = 9e-58
Identities = 103/124 (83%), Positives = 112/124 (90%)
Frame = -2
Query: 375 TATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTN 196
T TIRTRKFMTNRLL RKQMV DVLHPGK TV KTEIREKLAKMYK TPDV+FVFGF+T+
Sbjct: 4 TVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGFRTH 63
Query: 195 FGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKS 16
FGGGK+TGF +IYD+LD AKK EPKHRLARHGLYEKK+ +RKQRKERKNRMKKVRGT K+
Sbjct: 64 FGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGTAKA 123
Query: 15 KVGA 4
VGA
Sbjct: 124 NVGA 127
>M31520-2|AAA36588.1| 133|Homo sapiens ribosomal protein S24
protein.
Length = 133
Score = 221 bits (540), Expect = 9e-58
Identities = 103/124 (83%), Positives = 112/124 (90%)
Frame = -2
Query: 375 TATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTN 196
T TIRTRKFMTNRLL RKQMV DVLHPGK TV KTEIREKLAKMYK TPDV+FVFGF+T+
Sbjct: 4 TVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGFRTH 63
Query: 195 FGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKS 16
FGGGK+TGF +IYD+LD AKK EPKHRLARHGLYEKK+ +RKQRKERKNRMKKVRGT K+
Sbjct: 64 FGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGTAKA 123
Query: 15 KVGA 4
VGA
Sbjct: 124 NVGA 127
>BC071926-1|AAH71926.1| 130|Homo sapiens ribosomal protein S24
protein.
Length = 130
Score = 221 bits (540), Expect = 9e-58
Identities = 103/124 (83%), Positives = 112/124 (90%)
Frame = -2
Query: 375 TATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTN 196
T TIRTRKFMTNRLL RKQMV DVLHPGK TV KTEIREKLAKMYK TPDV+FVFGF+T+
Sbjct: 4 TVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGFRTH 63
Query: 195 FGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKS 16
FGGGK+TGF +IYD+LD AKK EPKHRLARHGLYEKK+ +RKQRKERKNRMKKVRGT K+
Sbjct: 64 FGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGTAKA 123
Query: 15 KVGA 4
VGA
Sbjct: 124 NVGA 127
>BC000523-1|AAH00523.1| 130|Homo sapiens ribosomal protein S24
protein.
Length = 130
Score = 221 bits (540), Expect = 9e-58
Identities = 103/124 (83%), Positives = 112/124 (90%)
Frame = -2
Query: 375 TATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTN 196
T TIRTRKFMTNRLL RKQMV DVLHPGK TV KTEIREKLAKMYK TPDV+FVFGF+T+
Sbjct: 4 TVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGFRTH 63
Query: 195 FGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKS 16
FGGGK+TGF +IYD+LD AKK EPKHRLARHGLYEKK+ +RKQRKERKNRMKKVRGT K+
Sbjct: 64 FGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGTAKA 123
Query: 15 KVGA 4
VGA
Sbjct: 124 NVGA 127
>AL512628-3|CAI16468.1| 133|Homo sapiens ribosomal protein S24
protein.
Length = 133
Score = 221 bits (540), Expect = 9e-58
Identities = 103/124 (83%), Positives = 112/124 (90%)
Frame = -2
Query: 375 TATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTN 196
T TIRTRKFMTNRLL RKQMV DVLHPGK TV KTEIREKLAKMYK TPDV+FVFGF+T+
Sbjct: 4 TVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGFRTH 63
Query: 195 FGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKS 16
FGGGK+TGF +IYD+LD AKK EPKHRLARHGLYEKK+ +RKQRKERKNRMKKVRGT K+
Sbjct: 64 FGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGTAKA 123
Query: 15 KVGA 4
VGA
Sbjct: 124 NVGA 127
>AL512628-2|CAI16467.1| 130|Homo sapiens ribosomal protein S24
protein.
Length = 130
Score = 221 bits (540), Expect = 9e-58
Identities = 103/124 (83%), Positives = 112/124 (90%)
Frame = -2
Query: 375 TATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTN 196
T TIRTRKFMTNRLL RKQMV DVLHPGK TV KTEIREKLAKMYK TPDV+FVFGF+T+
Sbjct: 4 TVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGFRTH 63
Query: 195 FGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKS 16
FGGGK+TGF +IYD+LD AKK EPKHRLARHGLYEKK+ +RKQRKERKNRMKKVRGT K+
Sbjct: 64 FGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGTAKA 123
Query: 15 KVGA 4
VGA
Sbjct: 124 NVGA 127
>BX537975-1|CAD97939.1| 132|Homo sapiens hypothetical protein
protein.
Length = 132
Score = 219 bits (536), Expect = 3e-57
Identities = 102/124 (82%), Positives = 112/124 (90%)
Frame = -2
Query: 375 TATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTN 196
T TIRTRKFMTNRLL RKQMV DVLHPGK TV KTEIREKLAKMYK TPDV+FVFGF+T+
Sbjct: 4 TVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGFRTH 63
Query: 195 FGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKS 16
FGGGK+TGF +IYD+LD AKK EPKHRLARHGLYEKK+ +R+QRKERKNRMKKVRGT K+
Sbjct: 64 FGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSREQRKERKNRMKKVRGTAKA 123
Query: 15 KVGA 4
VGA
Sbjct: 124 NVGA 127
>BC004173-1|AAH04173.1| 1500|Homo sapiens ANKRD17 protein protein.
Length = 1500
Score = 34.7 bits (76), Expect = 0.16
Identities = 16/44 (36%), Positives = 27/44 (61%)
Frame = -2
Query: 168 ALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 37
+++ + LDL K E RLA EKK+ +K++K++K + KK
Sbjct: 1457 SILLEELDLEKLREESRRLALAAKREKKKKKKKKKKKKKKKKKK 1500
>BC048271-1|AAH48271.1| 611|Homo sapiens ZC3H11A protein protein.
Length = 611
Score = 33.5 bits (73), Expect = 0.36
Identities = 16/58 (27%), Positives = 31/58 (53%)
Frame = -2
Query: 186 GKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKSK 13
G++TG + + + KH + G +KK+ +K++K++K + KK + KK K
Sbjct: 544 GETTGVDITKIQVKRCETMREKHMQKQPGNGKKKKKKKKKKKKKKKKKKKKKKKKKKK 601
>AF271256-1|AAK58397.1| 42|Homo sapiens HBV preS1(21-47) binding
protein protein.
Length = 42
Score = 31.9 bits (69), Expect = 1.1
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = -2
Query: 93 EKKRPTRKQRKERKNRMKKVRGTKKSK 13
E+K+ +K++KERK R KK + KK K
Sbjct: 6 ERKKERKKEKKERKKRKKKEKERKKEK 32
>Z98886-1|CAI22750.1| 411|Homo sapiens adherens junction associated
protein 1 protein.
Length = 411
Score = 31.5 bits (68), Expect = 1.5
Identities = 15/26 (57%), Positives = 15/26 (57%)
Frame = -1
Query: 148 RSGQEVRTQAQVSSPRPVREEEAHAQ 71
RSGQ R A V SPRP R E H Q
Sbjct: 67 RSGQPARVPAPVWSPRPPRVERIHGQ 92
>AY282806-1|AAP35025.1| 411|Homo sapiens transmembrane protein
SHREW1 protein.
Length = 411
Score = 31.5 bits (68), Expect = 1.5
Identities = 15/26 (57%), Positives = 15/26 (57%)
Frame = -1
Query: 148 RSGQEVRTQAQVSSPRPVREEEAHAQ 71
RSGQ R A V SPRP R E H Q
Sbjct: 67 RSGQPARVPAPVWSPRPPRVERIHGQ 92
>AL391808-1|CAH72438.1| 411|Homo sapiens adherens junction
associated protein 1 protein.
Length = 411
Score = 31.5 bits (68), Expect = 1.5
Identities = 15/26 (57%), Positives = 15/26 (57%)
Frame = -1
Query: 148 RSGQEVRTQAQVSSPRPVREEEAHAQ 71
RSGQ R A V SPRP R E H Q
Sbjct: 67 RSGQPARVPAPVWSPRPPRVERIHGQ 92
>AL023586-1|CAI20566.1| 411|Homo sapiens adherens junction
associated protein 1 protein.
Length = 411
Score = 31.5 bits (68), Expect = 1.5
Identities = 15/26 (57%), Positives = 15/26 (57%)
Frame = -1
Query: 148 RSGQEVRTQAQVSSPRPVREEEAHAQ 71
RSGQ R A V SPRP R E H Q
Sbjct: 67 RSGQPARVPAPVWSPRPPRVERIHGQ 92
>AK127997-1|BAC87222.1| 148|Homo sapiens protein ( Homo sapiens
cDNA FLJ46115 fis, clone TESTI2037085. ).
Length = 148
Score = 31.5 bits (68), Expect = 1.5
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = -2
Query: 138 KKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKSK 13
KK + K + + +KK+ +K++K++KN+ KK + KK K
Sbjct: 37 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKNKKKKKKKKKKKK 78
>AF175409-1|AAD53278.1| 411|Homo sapiens unknown protein.
Length = 411
Score = 31.5 bits (68), Expect = 1.5
Identities = 15/26 (57%), Positives = 15/26 (57%)
Frame = -1
Query: 148 RSGQEVRTQAQVSSPRPVREEEAHAQ 71
RSGQ R A V SPRP R E H Q
Sbjct: 67 RSGQPARVPAPVWSPRPPRVERIHGQ 92
>U91930-1|AAD03777.1| 1112|Homo sapiens AP-3 complex delta subunit
protein.
Length = 1112
Score = 31.1 bits (67), Expect = 1.9
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = -2
Query: 93 EKKRPTRKQRKERKNRMKKVRGTKKSK 13
+KK P K++K RK + ++ +G KKSK
Sbjct: 825 DKKSPKPKKKKHRKEKEERTKGKKKSK 851
>AC005545-2|AAC34214.1| 1079|Homo sapiens AP-3 complex delta
subunit, partial CDS protein.
Length = 1079
Score = 31.1 bits (67), Expect = 1.9
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = -2
Query: 93 EKKRPTRKQRKERKNRMKKVRGTKKSK 13
+KK P K++K RK + ++ +G KKSK
Sbjct: 792 DKKSPKPKKKKHRKEKEERTKGKKKSK 818
>AB208804-1|BAD92041.1| 1284|Homo sapiens Adapter-related protein
complex 3 delta 1 subunit variant protein.
Length = 1284
Score = 31.1 bits (67), Expect = 1.9
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = -2
Query: 93 EKKRPTRKQRKERKNRMKKVRGTKKSK 13
+KK P K++K RK + ++ +G KKSK
Sbjct: 997 DKKSPKPKKKKHRKEKEERTKGKKKSK 1023
>AK000295-1|BAA91063.1| 686|Homo sapiens protein ( Homo sapiens
cDNA FLJ20288 fis, clone HEP04414. ).
Length = 686
Score = 30.7 bits (66), Expect = 2.5
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = -2
Query: 168 ALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 37
+++ LDL K E + A EK++ RK++K++K + KK
Sbjct: 640 SILLKELDLEKSREESRKQALAAKREKRKEKRKKKKKKKKKKKK 683
>BC126410-1|AAI26411.1| 516|Homo sapiens leucine rich repeat
transmembrane neuronal 2 protein.
Length = 516
Score = 30.3 bits (65), Expect = 3.4
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +2
Query: 164 KANPVDLPPPKFVLKPNTNTTSGVTLYIL-ASFSRISVLLTVGFPGCKTSQTICLRANNL 340
K + L K PNT T + L L SF+++S L F G + QT+ LR+N+L
Sbjct: 110 KLKELILSSNKIFYLPNTTFTQLINLQNLDLSFNQLSSLHPELFYGLRKLQTLHLRSNSL 169
Query: 341 LVMNLRV 361
+ +R+
Sbjct: 170 RTIPVRL 176
>BC126408-1|AAI26409.1| 516|Homo sapiens leucine rich repeat
transmembrane neuronal 2 protein.
Length = 516
Score = 30.3 bits (65), Expect = 3.4
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +2
Query: 164 KANPVDLPPPKFVLKPNTNTTSGVTLYIL-ASFSRISVLLTVGFPGCKTSQTICLRANNL 340
K + L K PNT T + L L SF+++S L F G + QT+ LR+N+L
Sbjct: 110 KLKELILSSNKIFYLPNTTFTQLINLQNLDLSFNQLSSLHPELFYGLRKLQTLHLRSNSL 169
Query: 341 LVMNLRV 361
+ +R+
Sbjct: 170 RTIPVRL 176
>AY182026-1|AAO67547.1| 516|Homo sapiens leucine-rich repeat
transmembrane neuronal 2 protein protein.
Length = 516
Score = 30.3 bits (65), Expect = 3.4
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +2
Query: 164 KANPVDLPPPKFVLKPNTNTTSGVTLYIL-ASFSRISVLLTVGFPGCKTSQTICLRANNL 340
K + L K PNT T + L L SF+++S L F G + QT+ LR+N+L
Sbjct: 110 KLKELILSSNKIFYLPNTTFTQLINLQNLDLSFNQLSSLHPELFYGLRKLQTLHLRSNSL 169
Query: 341 LVMNLRV 361
+ +R+
Sbjct: 170 RTIPVRL 176
>AB014597-1|BAA31672.2| 2486|Homo sapiens KIAA0697 protein protein.
Length = 2486
Score = 30.3 bits (65), Expect = 3.4
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -2
Query: 168 ALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNR 46
+++ + LDL K E RLA EK++ R+++KE + R
Sbjct: 1340 SILLEELDLEKLREESRRLALAAKREKRKEKRRKKKEEQRR 1380
>AB007876-1|BAA24846.2| 529|Homo sapiens KIAA0416 protein.
Length = 529
Score = 30.3 bits (65), Expect = 3.4
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +2
Query: 164 KANPVDLPPPKFVLKPNTNTTSGVTLYIL-ASFSRISVLLTVGFPGCKTSQTICLRANNL 340
K + L K PNT T + L L SF+++S L F G + QT+ LR+N+L
Sbjct: 123 KLKELILSSNKIFYLPNTTFTQLINLQNLDLSFNQLSSLHPELFYGLRKLQTLHLRSNSL 182
Query: 341 LVMNLRV 361
+ +R+
Sbjct: 183 RTIPVRL 189
>Z84487-2|CAI42674.1| 2492|Homo sapiens alpha thalassemia/mental
retardation syndrome X-linked (RAD54 homolog, S. cerev
protein.
Length = 2492
Score = 29.9 bits (64), Expect = 4.5
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = -2
Query: 141 AKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKSKVGA 4
+KK +HRL RH L + +++K + K+V+G + KV +
Sbjct: 1331 SKKPRYRHRLLRHKLTVSDGESGEEKKTKPKEHKEVKGRNRRKVSS 1376
>Z84487-1|CAI42675.1| 2454|Homo sapiens alpha thalassemia/mental
retardation syndrome X-linked (RAD54 homolog, S. cerev
protein.
Length = 2454
Score = 29.9 bits (64), Expect = 4.5
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = -2
Query: 141 AKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKSKVGA 4
+KK +HRL RH L + +++K + K+V+G + KV +
Sbjct: 1293 SKKPRYRHRLLRHKLTVSDGESGEEKKTKPKEHKEVKGRNRRKVSS 1338
>U97103-1|AAC51657.1| 2375|Homo sapiens X-linked nuclear protein
protein.
Length = 2375
Score = 29.9 bits (64), Expect = 4.5
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = -2
Query: 141 AKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKSKVGA 4
+KK +HRL RH L + +++K + K+V+G + KV +
Sbjct: 1214 SKKPRYRHRLLRHKLTVSDGESGEEKKTKPKEHKEVKGRNRRKVSS 1259
>U75653-1|AAC51655.1| 2492|Homo sapiens zinc finger helicase protein.
Length = 2492
Score = 29.9 bits (64), Expect = 4.5
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = -2
Query: 141 AKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKSKVGA 4
+KK +HRL RH L + +++K + K+V+G + KV +
Sbjct: 1331 SKKPRYRHRLLRHKLTVSDGESGEEKKTKPKEHKEVKGRNRRKVSS 1376
>U72938-1|AAB49971.2| 2454|Homo sapiens putative DNA dependent ATPase
and helicase protein.
Length = 2454
Score = 29.9 bits (64), Expect = 4.5
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = -2
Query: 141 AKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKSKVGA 4
+KK +HRL RH L + +++K + K+V+G + KV +
Sbjct: 1293 SKKPRYRHRLLRHKLTVSDGESGEEKKTKPKEHKEVKGRNRRKVSS 1338
>U72937-1|AAB49970.2| 2492|Homo sapiens putative DNA dependent ATPase
and helicase protein.
Length = 2492
Score = 29.9 bits (64), Expect = 4.5
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = -2
Query: 141 AKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKSKVGA 4
+KK +HRL RH L + +++K + K+V+G + KV +
Sbjct: 1331 SKKPRYRHRLLRHKLTVSDGESGEEKKTKPKEHKEVKGRNRRKVSS 1376
>U72936-1|AAB49969.1| 2288|Homo sapiens putative DNA dependent ATPase
and helicase protein.
Length = 2288
Score = 29.9 bits (64), Expect = 4.5
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = -2
Query: 141 AKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKSKVGA 4
+KK +HRL RH L + +++K + K+V+G + KV +
Sbjct: 1127 SKKPRYRHRLLRHKLTVSDGESGEEKKTKPKEHKEVKGRNRRKVSS 1172
>U72935-3|AAB40700.1| 2288|Homo sapiens putative DNA dependent ATPase
and helicase protein.
Length = 2288
Score = 29.9 bits (64), Expect = 4.5
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = -2
Query: 141 AKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKSKVGA 4
+KK +HRL RH L + +++K + K+V+G + KV +
Sbjct: 1127 SKKPRYRHRLLRHKLTVSDGESGEEKKTKPKEHKEVKGRNRRKVSS 1172
>U72935-2|AAB40699.1| 2337|Homo sapiens putative DNA dependent ATPase
and helicase protein.
Length = 2337
Score = 29.9 bits (64), Expect = 4.5
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = -2
Query: 141 AKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKSKVGA 4
+KK +HRL RH L + +++K + K+V+G + KV +
Sbjct: 1176 SKKPRYRHRLLRHKLTVSDGESGEEKKTKPKEHKEVKGRNRRKVSS 1221
>U72935-1|AAB40698.1| 2375|Homo sapiens putative DNA dependent ATPase
and helicase protein.
Length = 2375
Score = 29.9 bits (64), Expect = 4.5
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = -2
Query: 141 AKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKSKVGA 4
+KK +HRL RH L + +++K + K+V+G + KV +
Sbjct: 1214 SKKPRYRHRLLRHKLTVSDGESGEEKKTKPKEHKEVKGRNRRKVSS 1259
>U09820-1|AAC50069.1| 1641|Homo sapiens helicase II protein.
Length = 1641
Score = 29.9 bits (64), Expect = 4.5
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = -2
Query: 141 AKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKSKVGA 4
+KK +HRL RH L + +++K + K+V+G + KV +
Sbjct: 472 SKKPRYRHRLLRHKLTVSDGESGEEKKTKPKEHKEVKGRNRRKVSS 517
>EF467914-1|ABO43036.1| 2492|Homo sapiens alpha thalassemia/mental
retardation syndrome X-linked protein.
Length = 2492
Score = 29.9 bits (64), Expect = 4.5
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = -2
Query: 141 AKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKSKVGA 4
+KK +HRL RH L + +++K + K+V+G + KV +
Sbjct: 1331 SKKPRYRHRLLRHKLTVSDGESGEEKKTKPKEHKEVKGRNRRKVSS 1376
>AL121874-2|CAI40710.1| 2492|Homo sapiens alpha thalassemia/mental
retardation syndrome X-linked (RAD54 homolog, S. cerev
protein.
Length = 2492
Score = 29.9 bits (64), Expect = 4.5
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = -2
Query: 141 AKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKSKVGA 4
+KK +HRL RH L + +++K + K+V+G + KV +
Sbjct: 1331 SKKPRYRHRLLRHKLTVSDGESGEEKKTKPKEHKEVKGRNRRKVSS 1376
>AL121874-1|CAB90351.2| 2454|Homo sapiens alpha thalassemia/mental
retardation syndrome X-linked (RAD54 homolog, S. cerev
protein.
Length = 2454
Score = 29.9 bits (64), Expect = 4.5
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = -2
Query: 141 AKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKSKVGA 4
+KK +HRL RH L + +++K + K+V+G + KV +
Sbjct: 1293 SKKPRYRHRLLRHKLTVSDGESGEEKKTKPKEHKEVKGRNRRKVSS 1338
>AL109753-2|CAI43115.1| 2492|Homo sapiens alpha thalassemia/mental
retardation syndrome X-linked (RAD54 homolog, S. cerev
protein.
Length = 2492
Score = 29.9 bits (64), Expect = 4.5
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = -2
Query: 141 AKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKSKVGA 4
+KK +HRL RH L + +++K + K+V+G + KV +
Sbjct: 1331 SKKPRYRHRLLRHKLTVSDGESGEEKKTKPKEHKEVKGRNRRKVSS 1376
>AL109753-1|CAI43116.1| 2454|Homo sapiens alpha thalassemia/mental
retardation syndrome X-linked (RAD54 homolog, S. cerev
protein.
Length = 2454
Score = 29.9 bits (64), Expect = 4.5
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = -2
Query: 141 AKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKSKVGA 4
+KK +HRL RH L + +++K + K+V+G + KV +
Sbjct: 1293 SKKPRYRHRLLRHKLTVSDGESGEEKKTKPKEHKEVKGRNRRKVSS 1338
>AB231746-1|BAE17134.1| 567|Homo sapiens hypothetical protein
protein.
Length = 567
Score = 29.9 bits (64), Expect = 4.5
Identities = 23/78 (29%), Positives = 37/78 (47%)
Frame = +1
Query: 40 LHSVLTFFTLFARGPLLLVQAVAS*PVLGFELLGQIECVVDQSESS*LATSEVCLETEYE 219
+HS+ T AR + AV+ + +G+IE ++ + S A +E CL+ E E
Sbjct: 103 VHSMSVRLTCHARSMVSEYSAVSR---NSLKEMGEIEKLLMEKCSELSAVTERCLQVENE 159
Query: 220 HYIGSNLVHFGELLTDLG 273
H + S E L+ LG
Sbjct: 160 HVLKSTKACVSETLSMLG 177
>AB209545-1|BAD92782.1| 1224|Homo sapiens transcriptional regulator
ATRX isoform 1 variant protein.
Length = 1224
Score = 29.9 bits (64), Expect = 4.5
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = -2
Query: 141 AKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKSKVGA 4
+KK +HRL RH L + +++K + K+V+G + KV +
Sbjct: 628 SKKPRYRHRLLRHKLTVSDGESGEEKKTKPKEHKEVKGRNRRKVSS 673
>AB208928-1|BAD92165.1| 1383|Homo sapiens transcriptional regulator
ATRX isoform 2 variant protein.
Length = 1383
Score = 29.9 bits (64), Expect = 4.5
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = -2
Query: 141 AKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKSKVGA 4
+KK +HRL RH L + +++K + K+V+G + KV +
Sbjct: 1296 SKKPRYRHRLLRHKLTVSDGESGEEKKTKPKEHKEVKGRNRRKVSS 1341
>AB102641-1|BAC81110.1| 2492|Homo sapiens ATRX protein.
Length = 2492
Score = 29.9 bits (64), Expect = 4.5
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = -2
Query: 141 AKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKSKVGA 4
+KK +HRL RH L + +++K + K+V+G + KV +
Sbjct: 1331 SKKPRYRHRLLRHKLTVSDGESGEEKKTKPKEHKEVKGRNRRKVSS 1376
>BC130280-1|AAI30281.1| 1621|Homo sapiens ABCA8 protein protein.
Length = 1621
Score = 29.5 bits (63), Expect = 5.9
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +2
Query: 8 PTLDFLVPRTFFILFLRSLRCL 73
P L FL+P FI+FL +LRCL
Sbjct: 1199 PFLVFLIPFLHFIIFLFTLRCL 1220
>AK025632-1|BAB15196.1| 720|Homo sapiens protein ( Homo sapiens
cDNA: FLJ21979 fis, clone HEP06065. ).
Length = 720
Score = 29.5 bits (63), Expect = 5.9
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = -2
Query: 153 TLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKSK 13
++D AKK + +KK+ +K++K++K + KK + KK K
Sbjct: 674 SMDKAKKSITNSDIVSISKKKKKKKKKKKKKKKKKKKKKKKKKKKKK 720
>AB231747-1|BAE17135.1| 490|Homo sapiens hypothetical protein
protein.
Length = 490
Score = 29.5 bits (63), Expect = 5.9
Identities = 23/78 (29%), Positives = 37/78 (47%)
Frame = +1
Query: 40 LHSVLTFFTLFARGPLLLVQAVAS*PVLGFELLGQIECVVDQSESS*LATSEVCLETEYE 219
+HS+ T AR + AV+ + +G+IE ++ + S A +E CL+ E E
Sbjct: 103 VHSMSVRLTCHARSMVSEYSAVSR---NSLKEMGEIEKLLMEKCSELSAVTERCLQVENE 159
Query: 220 HYIGSNLVHFGELLTDLG 273
H + S E L+ LG
Sbjct: 160 HVLKSMKACMSETLSMLG 177
>AB020629-1|BAA74845.2| 1591|Homo sapiens KIAA0822 protein protein.
Length = 1591
Score = 29.5 bits (63), Expect = 5.9
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +2
Query: 8 PTLDFLVPRTFFILFLRSLRCL 73
P L FL+P FI+FL +LRCL
Sbjct: 1169 PFLVFLIPFLHFIIFLFTLRCL 1190
>BC127700-1|AAI27701.1| 520|Homo sapiens INSC protein protein.
Length = 520
Score = 29.1 bits (62), Expect = 7.8
Identities = 23/78 (29%), Positives = 37/78 (47%)
Frame = +1
Query: 40 LHSVLTFFTLFARGPLLLVQAVAS*PVLGFELLGQIECVVDQSESS*LATSEVCLETEYE 219
+HS+ T AR + AV+ + +G+IE ++ + S A +E CL+ E E
Sbjct: 103 VHSMSVRLTCHARSMVSEYSAVSR---NSLKEMGEIEKLLMEKCSELSAVTERCLQVENE 159
Query: 220 HYIGSNLVHFGELLTDLG 273
H + S E L+ LG
Sbjct: 160 HVLKSMKACVSETLSMLG 177
>AK025859-1|BAB15260.1| 460|Homo sapiens protein ( Homo sapiens
cDNA: FLJ22206 fis, clone HRC01431. ).
Length = 460
Score = 29.1 bits (62), Expect = 7.8
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = -2
Query: 168 ALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERK 52
+++ + LDL K E RLA EK++ R+++K++K
Sbjct: 421 SILLEELDLEKLREESRRLALAAKREKRKEKRRKKKKKK 459
>AB236159-1|BAE93464.1| 579|Homo sapiens Inscuteable long form
protein.
Length = 579
Score = 29.1 bits (62), Expect = 7.8
Identities = 23/78 (29%), Positives = 37/78 (47%)
Frame = +1
Query: 40 LHSVLTFFTLFARGPLLLVQAVAS*PVLGFELLGQIECVVDQSESS*LATSEVCLETEYE 219
+HS+ T AR + AV+ + +G+IE ++ + S A +E CL+ E E
Sbjct: 150 VHSMSVRLTCHARSMVSEYSAVSR---NSLKEMGEIEKLLMEKCSELSAVTERCLQVENE 206
Query: 220 HYIGSNLVHFGELLTDLG 273
H + S E L+ LG
Sbjct: 207 HVLKSMKACVSETLSMLG 224
>AB236158-1|BAE93463.1| 532|Homo sapiens Inscuteable short form
protein.
Length = 532
Score = 29.1 bits (62), Expect = 7.8
Identities = 23/78 (29%), Positives = 37/78 (47%)
Frame = +1
Query: 40 LHSVLTFFTLFARGPLLLVQAVAS*PVLGFELLGQIECVVDQSESS*LATSEVCLETEYE 219
+HS+ T AR + AV+ + +G+IE ++ + S A +E CL+ E E
Sbjct: 103 VHSMSVRLTCHARSMVSEYSAVSR---NSLKEMGEIEKLLMEKCSELSAVTERCLQVENE 159
Query: 220 HYIGSNLVHFGELLTDLG 273
H + S E L+ LG
Sbjct: 160 HVLKSMKACVSETLSMLG 177
>AB231745-1|BAE17133.1| 532|Homo sapiens hypothetical protein
protein.
Length = 532
Score = 29.1 bits (62), Expect = 7.8
Identities = 23/78 (29%), Positives = 37/78 (47%)
Frame = +1
Query: 40 LHSVLTFFTLFARGPLLLVQAVAS*PVLGFELLGQIECVVDQSESS*LATSEVCLETEYE 219
+HS+ T AR + AV+ + +G+IE ++ + S A +E CL+ E E
Sbjct: 103 VHSMSVRLTCHARSMVSEYSAVSR---NSLKEMGEIEKLLMEKCSELSAVTERCLQVENE 159
Query: 220 HYIGSNLVHFGELLTDLG 273
H + S E L+ LG
Sbjct: 160 HVLKSMKACVSETLSMLG 177
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,735,845
Number of Sequences: 237096
Number of extensions: 1538397
Number of successful extensions: 4627
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 4311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4612
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3929066862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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