Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11a24
(463 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF036706-2|ABD94090.1| 131|Caenorhabditis elegans Ribosomal pro... 182 1e-46
Z29115-2|CAA82363.1| 91|Caenorhabditis elegans Hypothetical pr... 42 2e-04
AF036706-3|ABD94091.1| 204|Caenorhabditis elegans Hypothetical ... 40 9e-04
Z70684-8|CAA94603.2| 360|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z68879-4|CAA93085.1| 215|Caenorhabditis elegans Hypothetical pr... 29 2.1
AF039053-9|AAN84838.1| 131|Caenorhabditis elegans Hypothetical ... 28 2.8
AF039053-8|AAC25878.1| 178|Caenorhabditis elegans Hypothetical ... 28 2.8
U55366-7|AAA97985.2| 323|Caenorhabditis elegans Serpentine rece... 28 3.7
Z46242-15|CAA86337.2| 2507|Caenorhabditis elegans Hypothetical p... 27 4.9
Z35598-8|CAA84657.2| 2507|Caenorhabditis elegans Hypothetical pr... 27 4.9
AL032635-4|CAA21601.1| 140|Caenorhabditis elegans Hypothetical ... 27 4.9
Z69904-9|CAH60797.1| 2101|Caenorhabditis elegans Hypothetical pr... 27 6.5
Z69904-8|CAD57719.1| 2392|Caenorhabditis elegans Hypothetical pr... 27 6.5
Z69904-7|CAB54502.2| 2407|Caenorhabditis elegans Hypothetical pr... 27 6.5
Z69904-6|CAB54501.3| 2211|Caenorhabditis elegans Hypothetical pr... 27 6.5
Z66511-12|CAH60796.1| 2101|Caenorhabditis elegans Hypothetical p... 27 6.5
Z66511-11|CAD57694.1| 2392|Caenorhabditis elegans Hypothetical p... 27 6.5
Z66511-10|CAB54211.2| 2407|Caenorhabditis elegans Hypothetical p... 27 6.5
Z66511-9|CAB54210.3| 2211|Caenorhabditis elegans Hypothetical pr... 27 6.5
U88172-8|AAB42258.1| 312|Caenorhabditis elegans Hypothetical pr... 27 6.5
U55366-8|AAZ91347.1| 287|Caenorhabditis elegans Serpentine rece... 27 6.5
AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical ... 27 6.5
Z81114-2|CAB03286.1| 604|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z32683-1|CAA83621.1| 812|Caenorhabditis elegans Hypothetical pr... 27 8.6
AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical ... 27 8.6
AF016686-13|AAB66233.1| 470|Caenorhabditis elegans Hypothetical... 27 8.6
>AF036706-2|ABD94090.1| 131|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 24 protein.
Length = 131
Score = 182 bits (443), Expect = 1e-46
Identities = 85/123 (69%), Positives = 101/123 (82%), Gaps = 1/123 (0%)
Frame = -2
Query: 369 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFG 190
TIRTRK +TN+LL RKQMV +V+HPG+PTV K +IREK+AK+YK TPD V FGF++ G
Sbjct: 6 TIRTRKVLTNKLLYRKQMVVEVIHPGRPTVPKADIREKIAKLYKTTPDTVIPFGFESKIG 65
Query: 189 GGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEK-KRPTRKQRKERKNRMKKVRGTKKSK 13
GGKS GFAL+YDT+D AKKFEPK+RL R GL K ++P RKQRKERKNR KKVRGT K+K
Sbjct: 66 GGKSKGFALVYDTIDFAKKFEPKYRLVRMGLATKVEKPGRKQRKERKNRQKKVRGTAKAK 125
Query: 12 VGA 4
V A
Sbjct: 126 VSA 128
>Z29115-2|CAA82363.1| 91|Caenorhabditis elegans Hypothetical
protein T26G10.3 protein.
Length = 91
Score = 42.3 bits (95), Expect = 2e-04
Identities = 16/33 (48%), Positives = 23/33 (69%)
Frame = -2
Query: 318 MVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVV 220
MV +V+ PG+PT K +IREK+A Y + PD +
Sbjct: 1 MVAEVILPGRPTTLKADIREKIANFYNINPDTM 33
>AF036706-3|ABD94091.1| 204|Caenorhabditis elegans Hypothetical
protein T07A9.14 protein.
Length = 204
Score = 39.9 bits (89), Expect = 9e-04
Identities = 17/43 (39%), Positives = 26/43 (60%)
Frame = -2
Query: 174 GFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNR 46
GF L+YDT D A K++P+H + H R + +RKE++ R
Sbjct: 54 GFTLVYDTFDFANKYQPEHS-SNHDGASTSRTSISRRKEKRRR 95
>Z70684-8|CAA94603.2| 360|Caenorhabditis elegans Hypothetical
protein F28D1.8 protein.
Length = 360
Score = 28.7 bits (61), Expect = 2.1
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = -2
Query: 93 EKKRPTRKQRKERKNRMKKVRGTKKSKV 10
+KK+ T+K K++K+ K +G KKSKV
Sbjct: 309 KKKKKTKKGGKKKKSGAGKGKGKKKSKV 336
>Z68879-4|CAA93085.1| 215|Caenorhabditis elegans Hypothetical
protein K08F4.5 protein.
Length = 215
Score = 28.7 bits (61), Expect = 2.1
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = -2
Query: 138 KKFEPKHRLARHGLYEKKRPTRKQ--RKERKNRMKKVRGTKKSKVG 7
KK EPK ++ EKK T+K+ ++E+K +K ++SK G
Sbjct: 68 KKEEPKEKVPEKKEEEKKDATKKEEAKEEKKEEERKEEKKEESKEG 113
>AF039053-9|AAN84838.1| 131|Caenorhabditis elegans Hypothetical
protein C45H4.14b protein.
Length = 131
Score = 28.3 bits (60), Expect = 2.8
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = -2
Query: 162 IYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 37
I LD KK E KHR A+ +K+ ++Q K+ K +KK
Sbjct: 17 ILKKLDEKKKTEEKHR-AKQERQAQKKGAKEQAKKEKAELKK 57
>AF039053-8|AAC25878.1| 178|Caenorhabditis elegans Hypothetical
protein C45H4.14a protein.
Length = 178
Score = 28.3 bits (60), Expect = 2.8
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = -2
Query: 162 IYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 37
I LD KK E KHR A+ +K+ ++Q K+ K +KK
Sbjct: 64 ILKKLDEKKKTEEKHR-AKQERQAQKKGAKEQAKKEKAELKK 104
>U55366-7|AAA97985.2| 323|Caenorhabditis elegans Serpentine
receptor, class x protein74 protein.
Length = 323
Score = 27.9 bits (59), Expect = 3.7
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Frame = +2
Query: 257 FSRISVLLTV-GFPGCKTSQTICL-RA-NNLLVMNLRVRIVAVPSLILNY 397
FS + V L V GF + ICL RA NN++V+ + I P+L+L+Y
Sbjct: 22 FSSLIVYLYVSGFAEKTSFNVICLVRAVNNIIVLVVNFLIFLFPTLLLSY 71
>Z46242-15|CAA86337.2| 2507|Caenorhabditis elegans Hypothetical
protein F10F2.1 protein.
Length = 2507
Score = 27.5 bits (58), Expect = 4.9
Identities = 16/46 (34%), Positives = 27/46 (58%)
Frame = +1
Query: 130 ELLGQIECVVDQSESS*LATSEVCLETEYEHYIGSNLVHFGELLTD 267
+LL IE VVD+ + + S+ C +E + ++G N+VH L+D
Sbjct: 1077 DLLSGIERVVDEWKVAECGISDQCNASENQVFVG-NVVHVVSQLSD 1121
>Z35598-8|CAA84657.2| 2507|Caenorhabditis elegans Hypothetical protein
F10F2.1 protein.
Length = 2507
Score = 27.5 bits (58), Expect = 4.9
Identities = 16/46 (34%), Positives = 27/46 (58%)
Frame = +1
Query: 130 ELLGQIECVVDQSESS*LATSEVCLETEYEHYIGSNLVHFGELLTD 267
+LL IE VVD+ + + S+ C +E + ++G N+VH L+D
Sbjct: 1077 DLLSGIERVVDEWKVAECGISDQCNASENQVFVG-NVVHVVSQLSD 1121
>AL032635-4|CAA21601.1| 140|Caenorhabditis elegans Hypothetical
protein Y51A2A.6 protein.
Length = 140
Score = 27.5 bits (58), Expect = 4.9
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Frame = -2
Query: 207 FKTNFGGGKSTGFALI----YDTLDLAKKFEPKHRLARHGLYEKKRPTRKQR 64
F N GGGK+ GF+ + + KK H HG + RPTR R
Sbjct: 21 FVKNNGGGKNHGFSSASSSSSSSSEEGKKHGHGHHHHNHGRPSRPRPTRPPR 72
>Z69904-9|CAH60797.1| 2101|Caenorhabditis elegans Hypothetical
protein F07A11.6e protein.
Length = 2101
Score = 27.1 bits (57), Expect = 6.5
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -2
Query: 93 EKKRPTRKQRKERKNRMKKVR 31
E+KR +K+R ERK +KVR
Sbjct: 820 ERKREKKKERDERKKEKEKVR 840
>Z69904-8|CAD57719.1| 2392|Caenorhabditis elegans Hypothetical protein
F07A11.6c protein.
Length = 2392
Score = 27.1 bits (57), Expect = 6.5
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -2
Query: 93 EKKRPTRKQRKERKNRMKKVR 31
E+KR +K+R ERK +KVR
Sbjct: 1111 ERKREKKKERDERKKEKEKVR 1131
>Z69904-7|CAB54502.2| 2407|Caenorhabditis elegans Hypothetical protein
F07A11.6b protein.
Length = 2407
Score = 27.1 bits (57), Expect = 6.5
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -2
Query: 93 EKKRPTRKQRKERKNRMKKVR 31
E+KR +K+R ERK +KVR
Sbjct: 1126 ERKREKKKERDERKKEKEKVR 1146
>Z69904-6|CAB54501.3| 2211|Caenorhabditis elegans Hypothetical protein
F07A11.6a protein.
Length = 2211
Score = 27.1 bits (57), Expect = 6.5
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -2
Query: 93 EKKRPTRKQRKERKNRMKKVR 31
E+KR +K+R ERK +KVR
Sbjct: 1126 ERKREKKKERDERKKEKEKVR 1146
>Z66511-12|CAH60796.1| 2101|Caenorhabditis elegans Hypothetical
protein F07A11.6e protein.
Length = 2101
Score = 27.1 bits (57), Expect = 6.5
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -2
Query: 93 EKKRPTRKQRKERKNRMKKVR 31
E+KR +K+R ERK +KVR
Sbjct: 820 ERKREKKKERDERKKEKEKVR 840
>Z66511-11|CAD57694.1| 2392|Caenorhabditis elegans Hypothetical
protein F07A11.6c protein.
Length = 2392
Score = 27.1 bits (57), Expect = 6.5
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -2
Query: 93 EKKRPTRKQRKERKNRMKKVR 31
E+KR +K+R ERK +KVR
Sbjct: 1111 ERKREKKKERDERKKEKEKVR 1131
>Z66511-10|CAB54211.2| 2407|Caenorhabditis elegans Hypothetical
protein F07A11.6b protein.
Length = 2407
Score = 27.1 bits (57), Expect = 6.5
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -2
Query: 93 EKKRPTRKQRKERKNRMKKVR 31
E+KR +K+R ERK +KVR
Sbjct: 1126 ERKREKKKERDERKKEKEKVR 1146
>Z66511-9|CAB54210.3| 2211|Caenorhabditis elegans Hypothetical protein
F07A11.6a protein.
Length = 2211
Score = 27.1 bits (57), Expect = 6.5
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -2
Query: 93 EKKRPTRKQRKERKNRMKKVR 31
E+KR +K+R ERK +KVR
Sbjct: 1126 ERKREKKKERDERKKEKEKVR 1146
>U88172-8|AAB42258.1| 312|Caenorhabditis elegans Hypothetical
protein ZK354.3 protein.
Length = 312
Score = 27.1 bits (57), Expect = 6.5
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -2
Query: 141 AKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKSK 13
+KK E K +L+ E K + ++ ERK KK +KSK
Sbjct: 101 SKKTEEKDKLSVKKTQETKSERKDKKDERKEDDKKEENKEKSK 143
>U55366-8|AAZ91347.1| 287|Caenorhabditis elegans Serpentine
receptor, class x protein73 protein.
Length = 287
Score = 27.1 bits (57), Expect = 6.5
Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
Frame = +2
Query: 302 KTS-QTICL-RA-NNLLVMNLRVRIVAVPSLILNY 397
KTS ICL RA NN++V+ ++ PSL+L+Y
Sbjct: 4 KTSFNVICLTRAVNNIIVLVFNFLVITFPSLLLSY 38
>AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical
protein E01A2.4 protein.
Length = 504
Score = 27.1 bits (57), Expect = 6.5
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = -2
Query: 93 EKKRPTRKQRKERKNRMKKVRGTKKSK 13
+KK+ +K +K +K++ K+ + KKSK
Sbjct: 291 KKKKKVKKSKKSKKDKKKEKKEKKKSK 317
>Z81114-2|CAB03286.1| 604|Caenorhabditis elegans Hypothetical
protein T04D3.2 protein.
Length = 604
Score = 26.6 bits (56), Expect = 8.6
Identities = 17/63 (26%), Positives = 31/63 (49%)
Frame = -2
Query: 270 EIREKLAKMYKVTPDVVFVFGFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYE 91
+IR+++ +MY V V F + +IYD + LAKK + +L + L E
Sbjct: 424 KIRKEIPEMYGFIQTPVTVKTFIVQMEEERRKKTKIIYDKVQLAKKKNKEIKLKKKVLEE 483
Query: 90 KKR 82
+++
Sbjct: 484 EEK 486
>Z32683-1|CAA83621.1| 812|Caenorhabditis elegans Hypothetical
protein R07E5.1 protein.
Length = 812
Score = 26.6 bits (56), Expect = 8.6
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 90 KKRPTRKQRKERKNRMKKVRGTKKSK 13
KK+ K+ KE+K + KK + +KK K
Sbjct: 762 KKKKKDKKEKEKKKKSKKSKKSKKEK 787
>AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical
protein W09B6.1a protein.
Length = 2054
Score = 26.6 bits (56), Expect = 8.6
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = +1
Query: 307 IANHLLARQQSVGHEFASANSRCSFTHFEL 396
+A H+ A + S+G+ + +C+ HF L
Sbjct: 991 VAMHISAEEGSIGNTYPLPQMKCTIDHFTL 1020
>AF016686-13|AAB66233.1| 470|Caenorhabditis elegans Hypothetical
protein R07C3.3 protein.
Length = 470
Score = 26.6 bits (56), Expect = 8.6
Identities = 9/23 (39%), Positives = 18/23 (78%)
Frame = -1
Query: 433 QRHVRVDAELLKIIQNE*RNSDY 365
++H++ D + LK+ +N+ +NSDY
Sbjct: 260 KKHLKWDLKSLKLFRNDSKNSDY 282
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,244,798
Number of Sequences: 27780
Number of extensions: 237091
Number of successful extensions: 1031
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1023
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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