Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11a22
         (856 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    24   1.6  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    24   1.6  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   6.3  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    22   6.3  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    22   6.3  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   8.3  

>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 9/28 (32%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -1

Query: 577 LINTFK-ALDNYTILWKIDDEVVKNITL 497
           +++ +K A+D +  LW +D  ++ NI L
Sbjct: 125 IVSAYKIAIDKFDRLWVLDSGLINNIQL 152


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 82  TTAANVPYSNYYMYKSVLSIV 20
           T +   PY +YY Y  VL++V
Sbjct: 630 TLSTKCPYPSYYSYIGVLTLV 650


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 559 ALDNYTILWKIDDEVVKN 506
           A+D Y  LW +D  +V N
Sbjct: 133 AIDEYERLWVLDSGLVNN 150


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 9/32 (28%), Positives = 12/32 (37%)
 Frame = -2

Query: 840 PTHRQLKNCATRCNCFC*TYIPYLTTTDPCRP 745
           P++     C  RC  FC   +P       C P
Sbjct: 38  PSNEIFSRCDGRCQRFCPNVVPKPLCIKICAP 69


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 9/32 (28%), Positives = 12/32 (37%)
 Frame = -2

Query: 840 PTHRQLKNCATRCNCFC*TYIPYLTTTDPCRP 745
           P++     C  RC  FC   +P       C P
Sbjct: 38  PSNEIFSRCDGRCQRFCPNVVPKPLCIKICAP 69


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 7/25 (28%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -1

Query: 577 LINTFK-ALDNYTILWKIDDEVVKN 506
           +++ +K A+D +  LW +D  ++ N
Sbjct: 125 IVSAYKIAIDKFDRLWILDSGIINN 149


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 250,954
Number of Sequences: 438
Number of extensions: 5592
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27552579
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)