Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11a19
         (819 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   218   9e-58
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   217   1e-57
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    28   1.4  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    28   1.8  
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch...    28   1.8  
SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual      27   2.4  
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    27   4.2  
SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB comp...    25   9.8  

>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  218 bits (532), Expect = 9e-58
 Identities = 109/213 (51%), Positives = 149/213 (69%), Gaps = 2/213 (0%)
 Frame = -2

Query: 785 LKKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQ 606
           +++IPE+PLVV D VQ   KTK+AV  L+ +KA+ D++KV  S++LRAGKGK+RNRR +Q
Sbjct: 144 IEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVVKVANSRKLRAGKGKLRNRRHVQ 203

Query: 605 RKGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXLAPGGHLGRFVIWTQSAFGRLDPL 426
           R+GPL++FN+D G+ +AFRNIPGVE           LAPGGHLGRFVIWT+SAFG LD +
Sbjct: 204 RRGPLVVFNEDAGIVKAFRNIPGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSV 263

Query: 425 FGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPN-KRVIRA-TRKLNPLTN 252
           FGS    ++ KKN+ LP+  ++N D+TRL+ SDEI+ +++A    RV RA  +K NPL N
Sbjct: 264 FGSTTEAAQLKKNYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKN 323

Query: 251 NKAMLKLNPYAAVLKRKAILELRRRKNLKALAD 153
              + +LNPYA     KA ++L   K  KA  +
Sbjct: 324 KAVLARLNPYAKAY--KANVKLNTGKTPKAAGE 354


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  217 bits (531), Expect = 1e-57
 Identities = 108/213 (50%), Positives = 149/213 (69%), Gaps = 2/213 (0%)
 Frame = -2

Query: 785 LKKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQ 606
           +++IPE+PLVV D VQ   KTK+AV  L+ +KA+ D++KV  S++LRAGKGK+RNRR +Q
Sbjct: 144 IEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVIKVANSRKLRAGKGKLRNRRHVQ 203

Query: 605 RKGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXLAPGGHLGRFVIWTQSAFGRLDPL 426
           R+GPL++FN+D G+ +AFRNIPGVE           LAPGGHLGRFVIWT+SAFG LD +
Sbjct: 204 RRGPLVVFNEDTGIVKAFRNIPGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSV 263

Query: 425 FGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPN-KRVIRA-TRKLNPLTN 252
           FGS    ++ KKN+ LP+  ++N D+TRL+ SDEI+ +++A    RV RA  +K NPL N
Sbjct: 264 FGSTTEVAQLKKNYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKN 323

Query: 251 NKAMLKLNPYAAVLKRKAILELRRRKNLKALAD 153
              + +LNPYA     KA +++   K  KA  +
Sbjct: 324 KAVLSRLNPYAKAY--KANVKINSEKTPKAAGE 354


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 19/54 (35%), Positives = 33/54 (61%)
 Frame = +3

Query: 219 RVRIEFQHRLVIGERVQFACSTDHAFVGSTEDLPDLIRLEKTCEVSVGHLWLGQ 380
           +V +EF+ RL IG+RV+       AF+GS E +  L+ + +T + ++  L LG+
Sbjct: 207 QVAVEFRKRLNIGDRVKDGLLYKDAFLGS-EAVDVLMHIVRTTDRNLA-LLLGR 258


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = -2

Query: 401 KQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNP 225
           KQK + +  Q K     LT+   S E + VL       +R T+K   LTN+  ++K +P
Sbjct: 730 KQKAHLSADQCKQLANVLTQA--SPEAKTVLEQHRLSEMRKTKKQTELTNSAHVIKPSP 786


>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -3

Query: 478 LDVSSSGLSPHSAGLTPYSGHGRHHRNKRRTSTCPSQRWPTLTSH 344
           +D+ S+ LS H+   T +S   R H      ST PSQ + +  SH
Sbjct: 299 VDLQSNELSHHNVRTTLFSDDSRFHSKIHTHSTPPSQMY-SAASH 342


>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 656

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 26/95 (27%), Positives = 36/95 (37%), Gaps = 4/95 (4%)
 Frame = +3

Query: 438 PAECGLSPDDETSKMTSRSQLQEVQLVNIQELHTGDVAEG----ASQTLILVEDYEGPLT 605
           P E   SP    S  TS  Q   + +   Q+L    V++      S T ++ + YE PLT
Sbjct: 93  PRELQTSPI--VSPTTSPKQTPSINVTEPQDLELDKVSQDHEKDQSNTYLMEDGYEFPLT 150

Query: 606 LDTTTVAHFTLTSTKTLRLVHLKDIRPCLEAPQED 710
            D    +      T      HL+    CLE    D
Sbjct: 151 RDLIRRSKSDADQTPPTGFKHLRH-SSCLEMAGSD 184


>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -3

Query: 472 VSSSGLSPHSAGLTPYSGHGRHHRNK 395
           VS S    HS    P+S  GRH+R K
Sbjct: 120 VSRSSSIGHSGSTAPWSSVGRHNRKK 145


>SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB complex
           subunit Brf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
 Frame = -2

Query: 353 DLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAM-LKLNPYAAVLKRKAILELRRR 177
           ++T  LK DE+RK+    N +       L  + +++   + L+    + K +  +EL   
Sbjct: 366 EVTETLKGDELRKISLQVNVKFSEEEVTLEDVDDDEIEDILLDKDEILTKTQVWMEL--- 422

Query: 176 KNLKALADAEKSGLKLSKRNPAMKAEKLRERRR 78
            N   LA+ E   LKL +        + R+RRR
Sbjct: 423 -NKDYLAEEEAKNLKLQEDLKKGIVRQPRKRRR 454


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,925,137
Number of Sequences: 5004
Number of extensions: 55588
Number of successful extensions: 167
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)