Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11a19
(819 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X13382-1|CAA31759.1| 407|Drosophila melanogaster protein ( Dros... 303 2e-82
AY069485-1|AAL39630.1| 401|Drosophila melanogaster LD21756p pro... 302 3e-82
AE014297-4196|AAG22173.1| 401|Drosophila melanogaster CG5502-PA... 302 3e-82
BT025959-1|ABG02203.1| 233|Drosophila melanogaster IP15855p pro... 126 5e-29
X06881-1|CAA29998.1| 123|Drosophila melanogaster protein ( Dros... 57 3e-08
AY070560-1|AAL48031.1| 712|Drosophila melanogaster LD33051p pro... 34 0.20
AF173549-1|AAL29184.1| 712|Drosophila melanogaster mystery 45A ... 34 0.20
AE013599-787|AAF58986.2| 712|Drosophila melanogaster CG8070-PA ... 34 0.20
BT021245-1|AAX33393.1| 1823|Drosophila melanogaster RE64082p pro... 30 3.3
BT011445-1|AAR99103.1| 1514|Drosophila melanogaster RE48314p pro... 30 3.3
AY061099-1|AAL28647.1| 743|Drosophila melanogaster LD08841p pro... 30 3.3
AF247766-1|AAF86226.1| 1514|Drosophila melanogaster Toll-6 protein. 30 3.3
AF243382-1|AAF68440.1| 1548|Drosophila melanogaster cytoplasmic ... 30 3.3
AE014296-2500|AAF49645.1| 1514|Drosophila melanogaster CG7250-PA... 30 3.3
AE014296-703|AAF47799.2| 1818|Drosophila melanogaster CG10847-PB... 30 3.3
AE014296-702|AAS64963.1| 1823|Drosophila melanogaster CG10847-PA... 30 3.3
>X13382-1|CAA31759.1| 407|Drosophila melanogaster protein (
Drosophila melanogastermRNA for put. ribosomal protein
L1. ).
Length = 407
Score = 303 bits (744), Expect = 2e-82
Identities = 144/229 (62%), Positives = 179/229 (78%)
Frame = -2
Query: 776 IPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKG 597
+ E PLVV+D+VQ++ KTKQAVIFLRRLK W+DI KVYKSQR RAG+G MR+RRRI R+G
Sbjct: 150 VSEFPLVVSDEVQKVQKTKQAVIFLRRLKIWADIQKVYKSQRFRAGRGTMRDRRRIARRG 209
Query: 596 PLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXLAPGGHLGRFVIWTQSAFGRLDPLFGS 417
PL++++KD+GL +AFRNIPG+E LAPGGH+GRFVIWT+SAF RL+ LFG+
Sbjct: 210 PLVVYDKDEGLRKAFRNIPGIETINVDKLNVLKLAPGGHVGRFVIWTESAFARLNDLFGT 269
Query: 416 WKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAML 237
WK PS KK +NLPQPKMANTDL+RLLKS+EIRKVLR P KRV R+ R+LNPLTN + ++
Sbjct: 270 WKKPSTLKKGYNLPQPKMANTDLSRLLKSEEIRKVLRDPRKRVFRSVRRLNPLTNVRQLI 329
Query: 236 KLNPYAAVLKRKAILELRRRKNLKALADAEKSGLKLSKRNPAMKAEKLR 90
KLNPYA VLKR+A L +R K LA A+K ++L+K + A A K R
Sbjct: 330 KLNPYAEVLKRRAALAAEKRTVAKVLAKAKKQNVELAKSHFANVATKAR 378
>AY069485-1|AAL39630.1| 401|Drosophila melanogaster LD21756p
protein.
Length = 401
Score = 302 bits (742), Expect = 3e-82
Identities = 144/232 (62%), Positives = 179/232 (77%)
Frame = -2
Query: 776 IPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKG 597
+ E PLVV+D+VQ++ KTKQAVIFLRRLK W+DI KVYKSQR RAG+G MR+RRRI R+G
Sbjct: 150 VSEFPLVVSDEVQKVQKTKQAVIFLRRLKIWADIQKVYKSQRFRAGRGTMRDRRRIARRG 209
Query: 596 PLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXLAPGGHLGRFVIWTQSAFGRLDPLFGS 417
PL++++KD+GL +AFRNIPG+E LAPGGH+GRFVIWT+SAF RL+ LFG+
Sbjct: 210 PLVVYDKDEGLRKAFRNIPGIETINVDKLNLLKLAPGGHVGRFVIWTESAFARLNDLFGT 269
Query: 416 WKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAML 237
WK PS KK +NLPQPKMANTDL+RLLKS+EIRKVLR P KRV R+ R+LNPLTN + ++
Sbjct: 270 WKKPSTLKKGYNLPQPKMANTDLSRLLKSEEIRKVLRDPRKRVFRSVRRLNPLTNVRQLI 329
Query: 236 KLNPYAAVLKRKAILELRRRKNLKALADAEKSGLKLSKRNPAMKAEKLRERR 81
KLNPYA VLKR+A L +R K LA A+K ++L+K + A A K R
Sbjct: 330 KLNPYAEVLKRRAALAAEKRTVAKVLAKAKKQNVELAKSHFANVATKAAANR 381
>AE014297-4196|AAG22173.1| 401|Drosophila melanogaster CG5502-PA
protein.
Length = 401
Score = 302 bits (742), Expect = 3e-82
Identities = 144/232 (62%), Positives = 179/232 (77%)
Frame = -2
Query: 776 IPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKG 597
+ E PLVV+D+VQ++ KTKQAVIFLRRLK W+DI KVYKSQR RAG+G MR+RRRI R+G
Sbjct: 150 VSEFPLVVSDEVQKVQKTKQAVIFLRRLKIWADIQKVYKSQRFRAGRGTMRDRRRIARRG 209
Query: 596 PLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXLAPGGHLGRFVIWTQSAFGRLDPLFGS 417
PL++++KD+GL +AFRNIPG+E LAPGGH+GRFVIWT+SAF RL+ LFG+
Sbjct: 210 PLVVYDKDEGLRKAFRNIPGIETINVDKLNLLKLAPGGHVGRFVIWTESAFARLNDLFGT 269
Query: 416 WKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAML 237
WK PS KK +NLPQPKMANTDL+RLLKS+EIRKVLR P KRV R+ R+LNPLTN + ++
Sbjct: 270 WKKPSTLKKGYNLPQPKMANTDLSRLLKSEEIRKVLRDPRKRVFRSVRRLNPLTNVRQLI 329
Query: 236 KLNPYAAVLKRKAILELRRRKNLKALADAEKSGLKLSKRNPAMKAEKLRERR 81
KLNPYA VLKR+A L +R K LA A+K ++L+K + A A K R
Sbjct: 330 KLNPYAEVLKRRAALAAEKRTVAKVLAKAKKQNVELAKSHFANVATKAAANR 381
>BT025959-1|ABG02203.1| 233|Drosophila melanogaster IP15855p
protein.
Length = 233
Score = 126 bits (303), Expect = 5e-29
Identities = 55/79 (69%), Positives = 70/79 (88%)
Frame = -2
Query: 776 IPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKG 597
+ E PLVV+D+VQ++ KTKQAVIFLRRLK W+DI KVYKSQR RAG+G MR+RRRI R+G
Sbjct: 150 VSEFPLVVSDEVQKVQKTKQAVIFLRRLKIWADIQKVYKSQRFRAGRGTMRDRRRIARRG 209
Query: 596 PLIIFNKDQGLTRAFRNIP 540
PL++++KD+GL +AFRNIP
Sbjct: 210 PLVVYDKDEGLRKAFRNIP 228
>X06881-1|CAA29998.1| 123|Drosophila melanogaster protein (
Drosophila gene forribosomal protein L1 fragment. ).
Length = 123
Score = 57.2 bits (132), Expect = 3e-08
Identities = 25/36 (69%), Positives = 31/36 (86%)
Frame = -2
Query: 776 IPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILK 669
+ E PLVV+D+VQ++ KTKQAVIFLRRLK W+DI K
Sbjct: 88 VSEFPLVVSDEVQKVQKTKQAVIFLRRLKIWADIQK 123
>AY070560-1|AAL48031.1| 712|Drosophila melanogaster LD33051p
protein.
Length = 712
Score = 34.3 bits (75), Expect = 0.20
Identities = 29/112 (25%), Positives = 58/112 (51%), Gaps = 4/112 (3%)
Frame = -2
Query: 401 KQKKNFNLPQPKMANTDL--TRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKA-MLKL 231
K+KK+ + K A +L TR+ ++ +++ A K+ + + RK PL ++A +KL
Sbjct: 566 KEKKDMRILNQKEAAQELALTRIFTDEDFKRINAANLKKTVTSARK-RPLEQDRAEFVKL 624
Query: 230 NPYAAVLKRKAILELRRRKNLKA-LADAEKSGLKLSKRNPAMKAEKLRERRR 78
N + K++ + R + ++A D E+ G K + N ++ RE+R+
Sbjct: 625 NSIEMIYKKRKHDKESRLETVQAGRQDRERFGWKDGRVNEHC-SKTNREKRK 675
>AF173549-1|AAL29184.1| 712|Drosophila melanogaster mystery 45A
protein.
Length = 712
Score = 34.3 bits (75), Expect = 0.20
Identities = 29/112 (25%), Positives = 58/112 (51%), Gaps = 4/112 (3%)
Frame = -2
Query: 401 KQKKNFNLPQPKMANTDL--TRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKA-MLKL 231
K+KK+ + K A +L TR+ ++ +++ A K+ + + RK PL ++A +KL
Sbjct: 566 KEKKDMRILNQKEAAQELALTRIFTDEDFKRINAANLKKTVTSARK-RPLEQDRAEFVKL 624
Query: 230 NPYAAVLKRKAILELRRRKNLKA-LADAEKSGLKLSKRNPAMKAEKLRERRR 78
N + K++ + R + ++A D E+ G K + N ++ RE+R+
Sbjct: 625 NSIEMIYKKRKHDKESRLETVQAGRQDRERFGWKDGRVNEHC-SKTNREKRK 675
>AE013599-787|AAF58986.2| 712|Drosophila melanogaster CG8070-PA
protein.
Length = 712
Score = 34.3 bits (75), Expect = 0.20
Identities = 29/112 (25%), Positives = 58/112 (51%), Gaps = 4/112 (3%)
Frame = -2
Query: 401 KQKKNFNLPQPKMANTDL--TRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKA-MLKL 231
K+KK+ + K A +L TR+ ++ +++ A K+ + + RK PL ++A +KL
Sbjct: 566 KEKKDMRILNQKEAAQELALTRIFTDEDFKRINAANLKKTVTSARK-RPLEQDRAEFVKL 624
Query: 230 NPYAAVLKRKAILELRRRKNLKA-LADAEKSGLKLSKRNPAMKAEKLRERRR 78
N + K++ + R + ++A D E+ G K + N ++ RE+R+
Sbjct: 625 NSIEMIYKKRKHDKESRLETVQAGRQDRERFGWKDGRVNEHC-SKTNREKRK 675
>BT021245-1|AAX33393.1| 1823|Drosophila melanogaster RE64082p
protein.
Length = 1823
Score = 30.3 bits (65), Expect = 3.3
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = -2
Query: 452 SAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRA 303
S G + +G W+ +Q+K P+PK N + ++ S E R +R+
Sbjct: 588 SGGGGDEECYGGWEQQQQQQKQSQPPRPKRPNGKMLQMQNSTESRDGMRS 637
>BT011445-1|AAR99103.1| 1514|Drosophila melanogaster RE48314p protein.
Length = 1514
Score = 30.3 bits (65), Expect = 3.3
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -3
Query: 418 HGRHHRNKRRTSTCPSQRWPTLTSHVFSSLMRSGRSSVLP 299
+GR + NKR S C S R P++ + S ++G V+P
Sbjct: 1248 NGRGNNNKRVVSGCLSGRTPSVNMYATSHEYQAGNGGVIP 1287
>AY061099-1|AAL28647.1| 743|Drosophila melanogaster LD08841p
protein.
Length = 743
Score = 30.3 bits (65), Expect = 3.3
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -3
Query: 418 HGRHHRNKRRTSTCPSQRWPTLTSHVFSSLMRSGRSSVLP 299
+GR + NKR S C S R P++ + S ++G V+P
Sbjct: 477 NGRGNNNKRVVSGCLSGRTPSVNMYATSHEYQAGNGGVIP 516
>AF247766-1|AAF86226.1| 1514|Drosophila melanogaster Toll-6 protein.
Length = 1514
Score = 30.3 bits (65), Expect = 3.3
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -3
Query: 418 HGRHHRNKRRTSTCPSQRWPTLTSHVFSSLMRSGRSSVLP 299
+GR + NKR S C S R P++ + S ++G V+P
Sbjct: 1248 NGRGNNNKRVVSGCLSGRTPSVNMYATSHEYQAGNGGVIP 1287
>AF243382-1|AAF68440.1| 1548|Drosophila melanogaster cytoplasmic
protein encore protein.
Length = 1548
Score = 30.3 bits (65), Expect = 3.3
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = -2
Query: 452 SAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRA 303
S G + +G W+ +Q+K P+PK N + ++ S E R +R+
Sbjct: 439 SGGGGDEECYGGWEQQQQQQKQSQPPRPKRPNGKMLQMQNSTESRDGMRS 488
>AE014296-2500|AAF49645.1| 1514|Drosophila melanogaster CG7250-PA
protein.
Length = 1514
Score = 30.3 bits (65), Expect = 3.3
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -3
Query: 418 HGRHHRNKRRTSTCPSQRWPTLTSHVFSSLMRSGRSSVLP 299
+GR + NKR S C S R P++ + S ++G V+P
Sbjct: 1248 NGRGNNNKRVVSGCLSGRTPSVNMYATSHEYQAGNGGVIP 1287
>AE014296-703|AAF47799.2| 1818|Drosophila melanogaster CG10847-PB,
isoform B protein.
Length = 1818
Score = 30.3 bits (65), Expect = 3.3
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = -2
Query: 452 SAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRA 303
S G + +G W+ +Q+K P+PK N + ++ S E R +R+
Sbjct: 583 SGGGGDEECYGGWEQQQQQQKQSQPPRPKRPNGKMLQMQNSTESRDGMRS 632
>AE014296-702|AAS64963.1| 1823|Drosophila melanogaster CG10847-PA,
isoform A protein.
Length = 1823
Score = 30.3 bits (65), Expect = 3.3
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = -2
Query: 452 SAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRA 303
S G + +G W+ +Q+K P+PK N + ++ S E R +R+
Sbjct: 588 SGGGGDEECYGGWEQQQQQQKQSQPPRPKRPNGKMLQMQNSTESRDGMRS 637
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,189,531
Number of Sequences: 53049
Number of extensions: 693500
Number of successful extensions: 2428
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2419
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3860063376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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