Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11a18
         (862 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0127 - 18262499-18263104                                         29   3.6  
05_05_0134 + 22619297-22619801,22619879-22621960,22622067-22623718     29   6.3  

>05_04_0127 - 18262499-18263104
          Length = 201

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +3

Query: 393 EGVAPRPDLRPREGPRGPDGNGKFTPWSLSIVERGTSQLGSVS 521
           +  A   DLR   G    DGNG  TP  L+ V RG  +  +V+
Sbjct: 122 DAAAAEEDLRHAFGVFDADGNGVITPAELARVLRGIGEAATVA 164


>05_05_0134 + 22619297-22619801,22619879-22621960,22622067-22623718
          Length = 1412

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 106 VLSCCSTENEFSSASALVLYRTKGANNLE 192
           +LSCCS EN  +   +L L+  +G + LE
Sbjct: 380 ILSCCSPENLLNYVKSLALFPGQGGDLLE 408


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,445,719
Number of Sequences: 37544
Number of extensions: 347316
Number of successful extensions: 795
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)