Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11a18
         (862 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY062193-1|AAL58554.1|  151|Anopheles gambiae cytochrome P450 CY...    24   5.2  
AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodi...    24   6.8  

>AY062193-1|AAL58554.1|  151|Anopheles gambiae cytochrome P450
           CYP4D15 protein.
          Length = 151

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 563 IASNPSIQKKSFNNV 607
           +A NP +Q+K+FN V
Sbjct: 24  LAQNPDVQEKAFNEV 38


>AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodium
            channel alpha subunitprotein.
          Length = 2139

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -3

Query: 422  AQIGPRGNPLWPGVSSLHNETGDELAGMSLLCAGM 318
            A + P G  + P +SS H E   EL    +L  G+
Sbjct: 1084 ASVQPTGKGVCPCISSEHGENELELTPDDILADGL 1118


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 741,376
Number of Sequences: 2352
Number of extensions: 14077
Number of successful extensions: 26
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 91786122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)