Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11a18
         (862 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z67738-4|CAJ43444.1|  279|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z67738-3|CAA91544.2|  332|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z49937-5|CAC42288.1|  296|Caenorhabditis elegans Hypothetical pr...    29   5.6  
Z49937-4|CAC42287.1|  269|Caenorhabditis elegans Hypothetical pr...    29   5.6  
Z49937-3|CAA90186.2|  455|Caenorhabditis elegans Hypothetical pr...    29   5.6  
U31537-2|AAA82992.1|  261|Caenorhabditis elegans male abnormal-1...    29   5.6  
U31537-1|AAA82991.1|  455|Caenorhabditis elegans variable abnorm...    29   5.6  
U29184-1|AAC47542.1|  296|Caenorhabditis elegans MAB-18 protein.       29   5.6  
U29145-1|AAC47541.1|  284|Caenorhabditis elegans MAB-18 protein.       29   5.6  

>Z67738-4|CAJ43444.1|  279|Caenorhabditis elegans Hypothetical
           protein W03G11.1b protein.
          Length = 279

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 393 EGVAPRPDLRPREGPRGPDGN 455
           +G+A RP  R   GPRGP GN
Sbjct: 161 DGLAGRPGARGSPGPRGPSGN 181


>Z67738-3|CAA91544.2|  332|Caenorhabditis elegans Hypothetical
           protein W03G11.1a protein.
          Length = 332

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 393 EGVAPRPDLRPREGPRGPDGN 455
           +G+A RP  R   GPRGP GN
Sbjct: 214 DGLAGRPGARGSPGPRGPSGN 234


>Z49937-5|CAC42288.1|  296|Caenorhabditis elegans Hypothetical
           protein F14F3.1c protein.
          Length = 296

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 17/61 (27%), Positives = 26/61 (42%)
 Frame = +2

Query: 311 QNSFQHIRDSFQLTHHPSRYAGSLHPARGGCPEARFAPS*GAARTRWQREIYALVFKHSG 490
           Q   + +   F+ TH+P  +A      +   PEAR        R +W+RE      + SG
Sbjct: 67  QVQIESLEKEFERTHYPDVFARERLAQKIQLPEARIQVWFSNRRAKWRREEKMRNKRSSG 126

Query: 491 T 493
           T
Sbjct: 127 T 127


>Z49937-4|CAC42287.1|  269|Caenorhabditis elegans Hypothetical
           protein F14F3.1b protein.
          Length = 269

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 17/61 (27%), Positives = 26/61 (42%)
 Frame = +2

Query: 311 QNSFQHIRDSFQLTHHPSRYAGSLHPARGGCPEARFAPS*GAARTRWQREIYALVFKHSG 490
           Q   + +   F+ TH+P  +A      +   PEAR        R +W+RE      + SG
Sbjct: 40  QVQIESLEKEFERTHYPDVFARERLAQKIQLPEARIQVWFSNRRAKWRREEKMRNKRSSG 99

Query: 491 T 493
           T
Sbjct: 100 T 100


>Z49937-3|CAA90186.2|  455|Caenorhabditis elegans Hypothetical
           protein F14F3.1a protein.
          Length = 455

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 17/61 (27%), Positives = 26/61 (42%)
 Frame = +2

Query: 311 QNSFQHIRDSFQLTHHPSRYAGSLHPARGGCPEARFAPS*GAARTRWQREIYALVFKHSG 490
           Q   + +   F+ TH+P  +A      +   PEAR        R +W+RE      + SG
Sbjct: 226 QVQIESLEKEFERTHYPDVFARERLAQKIQLPEARIQVWFSNRRAKWRREEKMRNKRSSG 285

Query: 491 T 493
           T
Sbjct: 286 T 286


>U31537-2|AAA82992.1|  261|Caenorhabditis elegans male abnormal-18
           protein.
          Length = 261

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 17/61 (27%), Positives = 26/61 (42%)
 Frame = +2

Query: 311 QNSFQHIRDSFQLTHHPSRYAGSLHPARGGCPEARFAPS*GAARTRWQREIYALVFKHSG 490
           Q   + +   F+ TH+P  +A      +   PEAR        R +W+RE      + SG
Sbjct: 32  QVQIESLEKEFERTHYPDVFARERLAQKIQLPEARIQVWFSNRRAKWRREEKMRNKRSSG 91

Query: 491 T 493
           T
Sbjct: 92  T 92


>U31537-1|AAA82991.1|  455|Caenorhabditis elegans variable
           abnormal-3 protein.
          Length = 455

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 17/61 (27%), Positives = 26/61 (42%)
 Frame = +2

Query: 311 QNSFQHIRDSFQLTHHPSRYAGSLHPARGGCPEARFAPS*GAARTRWQREIYALVFKHSG 490
           Q   + +   F+ TH+P  +A      +   PEAR        R +W+RE      + SG
Sbjct: 226 QVQIESLEKEFERTHYPDVFARERLAQKIQLPEARIQVWFSNRRAKWRREEKMRNKRSSG 285

Query: 491 T 493
           T
Sbjct: 286 T 286


>U29184-1|AAC47542.1|  296|Caenorhabditis elegans MAB-18 protein.
          Length = 296

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 17/61 (27%), Positives = 26/61 (42%)
 Frame = +2

Query: 311 QNSFQHIRDSFQLTHHPSRYAGSLHPARGGCPEARFAPS*GAARTRWQREIYALVFKHSG 490
           Q   + +   F+ TH+P  +A      +   PEAR        R +W+RE      + SG
Sbjct: 67  QVQIESLEKEFERTHYPDVFARERLAQKIQLPEARIQVWFSNRRAKWRREEKMRNKRSSG 126

Query: 491 T 493
           T
Sbjct: 127 T 127


>U29145-1|AAC47541.1|  284|Caenorhabditis elegans MAB-18 protein.
          Length = 284

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 17/61 (27%), Positives = 26/61 (42%)
 Frame = +2

Query: 311 QNSFQHIRDSFQLTHHPSRYAGSLHPARGGCPEARFAPS*GAARTRWQREIYALVFKHSG 490
           Q   + +   F+ TH+P  +A      +   PEAR        R +W+RE      + SG
Sbjct: 55  QVQIESLEKEFERTHYPDVFARERLAQKIQLPEARIQVWFSNRRAKWRREEKMRNKRSSG 114

Query: 491 T 493
           T
Sbjct: 115 T 115


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,139,547
Number of Sequences: 27780
Number of extensions: 305730
Number of successful extensions: 859
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)