Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11a17
         (880 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031630-22|CAA20995.2|  454|Caenorhabditis elegans Hypothetical...    31   1.4  
Z81458-4|CAB03824.1|  623|Caenorhabditis elegans Hypothetical pr...    30   2.5  
Z99710-9|CAN99658.1|  402|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z99710-8|CAB16868.1|  383|Caenorhabditis elegans Hypothetical pr...    29   3.3  
EF015633-1|ABK20307.1|  383|Caenorhabditis elegans alpha 1,2-fuc...    29   3.3  
Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical pr...    29   5.8  
Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical pr...    29   5.8  
Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical p...    29   5.8  
AF067613-14|ABA54416.1|  395|Caenorhabditis elegans Hypothetical...    29   5.8  
AF067218-1|AAC17021.1| 1451|Caenorhabditis elegans Hypothetical ...    28   7.7  

>AL031630-22|CAA20995.2|  454|Caenorhabditis elegans Hypothetical
           protein Y38H6C.17 protein.
          Length = 454

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 497 ELVYSLWMFMIGQPPPFLARLILYSLFMP 583
           E +  +W F+ G PPPF   +++   F+P
Sbjct: 151 EHIIEIWQFIAGSPPPFSKIVLILMYFVP 179


>Z81458-4|CAB03824.1|  623|Caenorhabditis elegans Hypothetical
           protein C03E10.5 protein.
          Length = 623

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -3

Query: 752 TASPL*TTKR*WTCTSSPTSNPHAPTGATSSSLNTLLGGKKTT-CPTK*SELWSHPT 585
           T++P  T K   T TS+PTS   + T A  ++ +       TT CPTK      HPT
Sbjct: 181 TSTPT-TEKSSTTTTSTPTSEATSTTTAMITTTSGTTENPTTTDCPTKVCRYGFHPT 236


>Z99710-9|CAN99658.1|  402|Caenorhabditis elegans Hypothetical
           protein F08A8.5b protein.
          Length = 402

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +1

Query: 673 PVGACGFEVGDEVHVHHLLVVYNGEAVLNKTGPSFTQN-SLPLQLTINFMVSGFTLRI 843
           P G  G ++ + + +H +      +AV+N T PSF +  +  +Q     +   FTLRI
Sbjct: 91  PSGGLGNKLFEIISLHGIATSLQRKAVINATNPSFIETLNRNIQPLFPKLADQFTLRI 148


>Z99710-8|CAB16868.1|  383|Caenorhabditis elegans Hypothetical
           protein F08A8.5a protein.
          Length = 383

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +1

Query: 673 PVGACGFEVGDEVHVHHLLVVYNGEAVLNKTGPSFTQN-SLPLQLTINFMVSGFTLRI 843
           P G  G ++ + + +H +      +AV+N T PSF +  +  +Q     +   FTLRI
Sbjct: 72  PSGGLGNKLFEIISLHGIATSLQRKAVINATNPSFIETLNRNIQPLFPKLADQFTLRI 129


>EF015633-1|ABK20307.1|  383|Caenorhabditis elegans alpha
           1,2-fucosyltransferase protein.
          Length = 383

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +1

Query: 673 PVGACGFEVGDEVHVHHLLVVYNGEAVLNKTGPSFTQN-SLPLQLTINFMVSGFTLRI 843
           P G  G ++ + + +H +      +AV+N T PSF +  +  +Q     +   FTLRI
Sbjct: 72  PSGGLGNKLFEIISLHGIATSLQRKAVINATNPSFIETLNRNIQPLFPKLADQFTLRI 129


>Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical
           protein C30H6.11 protein.
          Length = 460

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 21/63 (33%), Positives = 29/63 (46%)
 Frame = -3

Query: 752 TASPL*TTKR*WTCTSSPTSNPHAPTGATSSSLNTLLGGKKTTCPTK*SELWSHPTWA*T 573
           T +P  TT    T T++PT+   APT  T++   T      TT  T  +   + PT   T
Sbjct: 172 TTTPTTTTTTPTTTTTTPTTTTTAPTTTTTTPTTTTT--TPTTTTTVPTTTTTTPTTTTT 229

Query: 572 TNT 564
           T T
Sbjct: 230 TTT 232



 Score = 28.3 bits (60), Expect = 7.7
 Identities = 21/63 (33%), Positives = 30/63 (47%)
 Frame = -3

Query: 752 TASPL*TTKR*WTCTSSPTSNPHAPTGATSSSLNTLLGGKKTTCPTK*SELWSHPTWA*T 573
           T +P  TT    T T++PT+    PT  T+ +  T      TT PT  ++  + PT   T
Sbjct: 221 TTTPTTTT----TTTTTPTTTTTTPTTTTTPATTT--SETTTTTPTTTTQTTTKPTTTTT 274

Query: 572 TNT 564
           T T
Sbjct: 275 TPT 277


>Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical protein
            F25F2.2 protein.
          Length = 4307

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +1

Query: 601  NSDYFVGHVVF-FPPKSVLSEELVAPVGACGFEVGDEVHVHHLLVVYNGEAV 753
            NS YFVGH  F F  +S   ++++A V A   + G+   V + +V  N E++
Sbjct: 1478 NSPYFVGHTAFAFVDESDTVDDVLATVTAFDKDRGENGIVTYSIVSGNEESL 1529


>Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical protein
            F25F2.2 protein.
          Length = 4307

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +1

Query: 601  NSDYFVGHVVF-FPPKSVLSEELVAPVGACGFEVGDEVHVHHLLVVYNGEAV 753
            NS YFVGH  F F  +S   ++++A V A   + G+   V + +V  N E++
Sbjct: 1478 NSPYFVGHTAFAFVDESDTVDDVLATVTAFDKDRGENGIVTYSIVSGNEESL 1529


>Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical
            protein F25F2.2 protein.
          Length = 4307

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +1

Query: 601  NSDYFVGHVVF-FPPKSVLSEELVAPVGACGFEVGDEVHVHHLLVVYNGEAV 753
            NS YFVGH  F F  +S   ++++A V A   + G+   V + +V  N E++
Sbjct: 1478 NSPYFVGHTAFAFVDESDTVDDVLATVTAFDKDRGENGIVTYSIVSGNEESL 1529


>AF067613-14|ABA54416.1|  395|Caenorhabditis elegans Hypothetical
           protein F56D6.15 protein.
          Length = 395

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -3

Query: 728 KR*WTCTSSPTSNPHA--PTGATSSSLNTLLGGKKT 627
           K  + C+  PT  P A  PT  T++++N  LGG++T
Sbjct: 113 KNYFVCSYDPTVQPKATTPTTTTAANVNCPLGGQQT 148


>AF067218-1|AAC17021.1| 1451|Caenorhabditis elegans Hypothetical
           protein K10E9.1 protein.
          Length = 1451

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 197 FALTYHPKDYKFNELLKYVQQLSVNQQRTE 286
           FAL Y  + Y+FN++ K + Q+  +Q+  E
Sbjct: 363 FALKYPDRSYEFNKMYKKLYQIMEDQEEDE 392


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,976,459
Number of Sequences: 27780
Number of extensions: 425154
Number of successful extensions: 1218
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1211
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)