Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11a14
(578 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family Sec14|Schi... 54 2e-08
SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces ... 30 0.21
SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual 30 0.28
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc... 26 3.5
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce... 26 3.5
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 25 6.1
SPAC1610.04 |mug99||meiotically upregulated gene Mug99|Schizosac... 25 6.1
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 25 8.0
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 25 8.0
SPCC191.09c |gst1||glutathione S-transferase Gst1|Schizosaccharo... 25 8.0
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ... 25 8.0
>SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family
Sec14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 286
Score = 54.0 bits (124), Expect = 2e-08
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Frame = -1
Query: 413 IKKMVVASQDAMPFRQKGTHYLNTPTGFETIFNTIKALMNEKNKKRLYVHNQNYEE-MYK 237
I++ SQD P R + +N P GF + FN IK ++E K++++ NY+ + +
Sbjct: 189 IRQASSISQDYYPERMGKFYVINAPWGFSSAFNLIKGFLDEATVKKIHILGSNYKSALLE 248
Query: 236 YIPKDILPVEYGGN 195
IP D LP + GGN
Sbjct: 249 QIPADNLPAKLGGN 262
>SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 388
Score = 30.3 bits (65), Expect = 0.21
Identities = 15/59 (25%), Positives = 30/59 (50%)
Frame = -1
Query: 344 TPTGFETIFNTIKALMNEKNKKRLYVHNQNYEEMYKYIPKDILPVEYGGNGGSIEEIID 168
+P F +++N IK + + ++ V Q+ ++ KYI ++P GG I + I+
Sbjct: 244 SPWIFRSVWNIIKGWIKPEIAAKI-VFTQSANDLEKYIDYSVIPTSLGGGNKKIFQYIE 301
>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 656
Score = 29.9 bits (64), Expect = 0.28
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Frame = -1
Query: 266 HNQNYEEMYKYIPKDILPVEYGGNGG-SIEEIIDYWRKKVKEYSDWLEEDDQYGTDESKR 90
H +Y M + + P+E S +++WR + E SD EE+D SK
Sbjct: 544 HRSSYVYMNELVDHFFPPIEVSTRDEVSSFTDVNFWRSPLLELSD--EEEDDTNKSTSKS 601
Query: 89 PGKPKTAE 66
P PK +
Sbjct: 602 PKTPKNTK 609
>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1050
Score = 26.2 bits (55), Expect = 3.5
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 3/30 (10%)
Frame = +3
Query: 45 TLDAEHILSGLRFPWSL---GLVRTVLIVF 125
TL+ IL LRFPW + G+++T+L++F
Sbjct: 88 TLNVLSILLYLRFPWIIGEAGVLKTLLMLF 117
>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 26.2 bits (55), Expect = 3.5
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -1
Query: 191 GSIEEIIDYWRKKVKEYSDWLE 126
GSI +I WRKK+ EY +LE
Sbjct: 172 GSIYDICFRWRKKLIEYRAFLE 193
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 25.4 bits (53), Expect = 6.1
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -1
Query: 449 KISHFLQMTPMLIKKMVVASQDAMPFRQKGTHYLN 345
+ISH L++ +L+K + D F K T+ LN
Sbjct: 528 RISHTLELQDILVKLSTPKNNDVFIFSSKITNKLN 562
>SPAC1610.04 |mug99||meiotically upregulated gene
Mug99|Schizosaccharomyces pombe|chr 1|||Manual
Length = 526
Score = 25.4 bits (53), Expect = 6.1
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +3
Query: 6 QVQNLIEFKLPEGTLDAEHILS-GLRFPWSLGLVRTVLIVFFQPVTIFLDFFP 161
QV NL LP GT+D++ + S R+ S +R F T+ LD P
Sbjct: 147 QVNNLEIIHLPPGTVDSDILASCHARYICSTSYLRMTSSDFTTADTLVLDIDP 199
>SPAC23D3.13c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1616
Score = 25.0 bits (52), Expect = 8.0
Identities = 12/49 (24%), Positives = 20/49 (40%)
Frame = +3
Query: 150 DFFPPVIYNFFNRTTVPAIFYW*NVLRDIFVHLFIILVVDVEAFFIFFV 296
D P + + + + P +L IF H L +D+E F F +
Sbjct: 245 DLLPIITASLASMSDFPVALRISRILNIIFQHYVTSLTLDIEVIFSFII 293
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 25.0 bits (52), Expect = 8.0
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = -1
Query: 410 KKMVVASQDAMP-FRQKGTHYLNTPTGFE---TIFNTIKALMNEKNKKRLYVHNQN 255
K+M ++S DA+ K N E T+ L +E N+ +VHNQN
Sbjct: 278 KEMQISSLDAVDKLEDKPVSNDNIKANIESSTTVDRASSQLESENNESTFFVHNQN 333
>SPCC191.09c |gst1||glutathione S-transferase
Gst1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 229
Score = 25.0 bits (52), Expect = 8.0
Identities = 14/43 (32%), Positives = 27/43 (62%)
Frame = -1
Query: 554 SDVLAVYFVLEKIVMMEDDNAIVAGIFFVADLDALKISHFLQM 426
+++ V VLE I ++D + +VA F +ADL + ++FL++
Sbjct: 138 NEIKRVLGVLEDI--LKDRDYLVANRFTIADLSFISWNNFLEI 178
>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
2|||Manual
Length = 962
Score = 25.0 bits (52), Expect = 8.0
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = -3
Query: 441 SFLTNDTNAHQENGGCFSGC-NAFPPERYPLFKYSDRIRNNFQYYKSINE 295
S L ND + G SG N+F ++P+ ++ R+R + NE
Sbjct: 724 SVLRNDKLIKSIHPGSLSGISNSFVNSKHPIEQWQSRLRKILHLFSGRNE 773
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,575,468
Number of Sequences: 5004
Number of extensions: 56786
Number of successful extensions: 197
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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