Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11a14
(578 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0537 + 18410201-18410207,18410301-18410586,18410674-184107... 44 1e-04
03_05_0960 + 29221087-29221091,29221370-29221468,29221773-292218... 42 3e-04
05_06_0271 + 26836396-26836610,26836793-26836872,26837573-268376... 41 8e-04
08_02_1133 + 24554037-24554043,24554524-24554797,24554890-245549... 38 0.006
02_01_0263 + 1743661-1743694,1744939-1745236,1745318-1745417,174... 36 0.018
01_06_0403 - 29060712-29060732,29061260-29061334,29061596-290617... 35 0.041
02_03_0040 + 14262137-14262182,14262456-14262738,14262824-142629... 33 0.16
06_03_1085 + 27491735-27492754,27492854-27492978,27493088-274932... 32 0.29
08_02_0290 + 15383473-15383669,15385057-15385267,15386389-153864... 32 0.38
02_01_0264 - 1748883-1748888,1748943-1749017,1749453-1749868,175... 32 0.38
02_04_0624 + 24538095-24538183,24538429-24538612,24538725-245388... 31 0.66
11_05_0072 - 18832152-18832341,18832470-18832582 30 1.2
01_06_1698 - 39264075-39264468,39264545-39264696,39264780-392648... 29 2.0
01_02_0024 + 10306193-10306247,10306536-10306717 29 2.0
05_03_0218 - 10437377-10437622,10437896-10438141,10438528-104386... 29 3.5
01_05_0422 - 22018579-22018698,22019548-22019644,22019744-220199... 28 4.7
07_03_1539 + 27567397-27568985,27569153-27569279,27569361-27569837 27 8.2
05_04_0196 - 18964927-18965218,18965337-18965503,18966182-189663... 27 8.2
>09_04_0537 +
18410201-18410207,18410301-18410586,18410674-18410773,
18410881-18411147,18411286-18411363,18411444-18411545,
18411628-18411677,18411793-18411889,18412248-18412361,
18412495-18412666,18412865-18413217,18413812-18413898,
18413981-18414001
Length = 577
Score = 43.6 bits (98), Expect = 1e-04
Identities = 22/93 (23%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Frame = -1
Query: 470 VADLDALKISHFLQMTPMLIKKMVVASQDAMPFRQKGTHYLNTPTGFETIFNTIKALMNE 291
+ D+ + + +F + L+ +M D P + +N +GF+ I+N++K ++
Sbjct: 214 ILDVHGVGLKNFSKTARELVHRMQKIDSDYYPETLHQMYVVNAGSGFKLIWNSVKGFLDP 273
Query: 290 KNKKRLYVHNQNYE-EMYKYIPKDILPVEYGGN 195
K +++V NY+ + + I K LP GG+
Sbjct: 274 KTSSKIHVLGTNYQSRLLEVIDKSELPEFLGGS 306
>03_05_0960 +
29221087-29221091,29221370-29221468,29221773-29221815,
29222056-29222154,29222240-29222485,29222633-29222941
Length = 266
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Frame = -1
Query: 347 NTPTGFETIFNTIKALMNEKNKKRL-YVHNQNYEEM---YKYIPKDILPVEYGGNGGSIE 180
N P FE + +K ++ K+ +++ +V+ +N E M +KYI ++LPVE+GG +
Sbjct: 154 NPPKVFEAFWKVVKHFLDPKSIQKVNFVYLKNEESMKILHKYIDPEVLPVEFGGKNNVVY 213
Query: 179 EIIDYWRKKVKE 144
+Y + VK+
Sbjct: 214 SHEEYSKLMVKD 225
>05_06_0271 +
26836396-26836610,26836793-26836872,26837573-26837641,
26837694-26837985,26838303-26838399,26838478-26838744,
26838832-26838909,26839019-26839120,26839251-26839300,
26839383-26839482,26839645-26839743,26839840-26839968,
26840319-26840427,26840652-26841055,26841140-26841280,
26841373-26841393
Length = 750
Score = 40.7 bits (91), Expect = 8e-04
Identities = 19/92 (20%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Frame = -1
Query: 470 VADLDALKISHFLQMTPMLIKKMVVASQDAMPFRQKGTHYLNTPTGFETIFNTIKALMNE 291
+ D+ + + +F + LI ++ D P + + +N GF+ +++T+K+ ++
Sbjct: 334 ILDVQGVGLKNFSKAARDLITRLQKIDNDNYPETLRRMYIINAGQGFKMLWSTVKSFLDP 393
Query: 290 KNKKRLYVHNQNYE-EMYKYIPKDILPVEYGG 198
K +++V Y+ ++ + I ++ LP +GG
Sbjct: 394 KTASKIHVLGSKYQNKLLEIIDENELPEFFGG 425
>08_02_1133 +
24554037-24554043,24554524-24554797,24554890-24554989,
24555089-24555355,24555455-24555532,24555616-24555717,
24555798-24555847,24555916-24556051,24556374-24556490,
24556659-24556818,24557450-24557811,24558075-24558152,
24558274-24558294
Length = 583
Score = 37.9 bits (84), Expect = 0.006
Identities = 17/74 (22%), Positives = 35/74 (47%)
Frame = -1
Query: 470 VADLDALKISHFLQMTPMLIKKMVVASQDAMPFRQKGTHYLNTPTGFETIFNTIKALMNE 291
+ D+ + +F + LI +M D P +N +GF+ I+N++K ++
Sbjct: 210 ILDVQGVGFKNFSKTARELINRMQKIDSDYYPETLHQMFVVNAGSGFKLIWNSVKGFLDP 269
Query: 290 KNKKRLYVHNQNYE 249
K +++V NY+
Sbjct: 270 KTSSKIHVLGSNYQ 283
>02_01_0263 +
1743661-1743694,1744939-1745236,1745318-1745417,
1745500-1745766,1745859-1745936,1746023-1746124,
1746205-1746254,1746347-1746446,1746550-1746648,
1746742-1746858,1747187-1747313,1747396-1747793,
1747900-1748004
Length = 624
Score = 36.3 bits (80), Expect = 0.018
Identities = 20/92 (21%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Frame = -1
Query: 470 VADLDALKISHFLQMTPMLIKKMVVASQDAMPFRQKGTHYLNTPTGFETIFNTIKALMNE 291
+ D+ + + +F + LI ++ D P +N GF ++NT+K+ ++
Sbjct: 227 ILDVQGVGLKNFSKTARELIVRLQKIDNDNYPETLYQMFIVNAGPGFRLLWNTVKSFLDP 286
Query: 290 KNKKRLYVHNQNYE-EMYKYIPKDILPVEYGG 198
K +++V Y+ ++ + I LP GG
Sbjct: 287 KTTSKIHVLGNKYQSKLLEVIDASELPEFLGG 318
>01_06_0403 -
29060712-29060732,29061260-29061334,29061596-29061762,
29061841-29061996,29062412-29062535,29062949-29063047,
29063155-29063254,29063331-29063380,29063461-29063562,
29063709-29063786,29063865-29064131,29064225-29064321,
29064446-29064746,29066714-29066805,29066890-29067005,
29067445-29067519,29067846-29067911,29068206-29068262,
29068381-29068430,29068518-29068688,29068969-29069060,
29069124-29069281
Length = 837
Score = 35.1 bits (77), Expect = 0.041
Identities = 19/92 (20%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Frame = -1
Query: 470 VADLDALKISHFLQMTPMLIKKMVVASQDAMPFRQKGTHYLNTPTGFETIFNTIKALMNE 291
+ D+ + + +F + LI ++ + D P + +N GF+ ++ TIK+ ++
Sbjct: 508 ILDVQGVGLKNFSKDARELIMRLQKINNDNYPETLHRLYIINAGQGFKMLWGTIKSFLDP 567
Query: 290 KNKKRLYVHNQNYE-EMYKYIPKDILPVEYGG 198
+ +++V Y+ ++ + I + LP GG
Sbjct: 568 QTASKIHVLGSKYQNKLLETIDESELPDFLGG 599
>02_03_0040 +
14262137-14262182,14262456-14262738,14262824-14262923,
14263027-14263293,14263378-14263455,14263552-14263653,
14263731-14263780,14263864-14263957,14264060-14264161,
14264855-14264960,14265056-14265414,14265572-14265646,
14265890-14265907
Length = 559
Score = 33.1 bits (72), Expect = 0.16
Identities = 19/92 (20%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Frame = -1
Query: 470 VADLDALKISHFLQMTPMLIKKMVVASQDAMPFRQKGTHYLNTPTGFETIFNTIKALMNE 291
+ D+ + + F + LI ++ D P +N GF +++T+K+ ++
Sbjct: 226 ILDVQGVGMKQFSKAARDLIGQLQKIDGDNYPETLCRMFIINAGPGFRLLWSTVKSFLDP 285
Query: 290 KNKKRLYVHNQNYE-EMYKYIPKDILPVEYGG 198
K +++V Y+ ++ + I LP +GG
Sbjct: 286 KTTAKIHVLGNKYQSKLLEVIDASELPEFFGG 317
>06_03_1085 +
27491735-27492754,27492854-27492978,27493088-27493232,
27493328-27493591
Length = 517
Score = 32.3 bits (70), Expect = 0.29
Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Frame = -1
Query: 413 IKKMVVASQDAMPFRQKGTHYLNTPTGFETIFNTIKALMNEKNKKRLYVHNQNY--EEMY 240
+K+++ QD P +N P + M ++ K + + + E +
Sbjct: 322 MKQVLDLFQDNYPELVARNILINVPFWYYAFSTLFYPFMTQRTKSKFVIARPSKVTETLL 381
Query: 239 KYIPKDILPVEYGG 198
KYIP + +PV+YGG
Sbjct: 382 KYIPIEAIPVKYGG 395
>08_02_0290 +
15383473-15383669,15385057-15385267,15386389-15386440,
15386545-15386863,15387022-15387121,15387391-15387657,
15387780-15387857,15387943-15388032,15388119-15388168,
15388267-15388366,15388777-15388875,15389023-15389136,
15389238-15389412,15389726-15390132,15390565-15390639,
15391412-15391438
Length = 786
Score = 31.9 bits (69), Expect = 0.38
Identities = 19/92 (20%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Frame = -1
Query: 470 VADLDALKISHFLQMTPMLIKKMVVASQDAMPFRQKGTHYLNTPTGFETIFNTIKALMNE 291
+ D+D + + +F + ++ +M D P +N GF+ ++NT+K ++
Sbjct: 376 ILDVDGVGLKNFSKTARDMLGRMQKIDSDYYP----EMFVVNAGNGFKLLWNTVKGFLDP 431
Query: 290 KNKKRLYVHNQNYE-EMYKYIPKDILPVEYGG 198
K +++V + ++ + I LP GG
Sbjct: 432 KTASKIHVLGTKFHGKLLEVIDASQLPEFLGG 463
>02_01_0264 -
1748883-1748888,1748943-1749017,1749453-1749868,
1750095-1750215,1750423-1750533,1750636-1750737,
1750896-1750989,1751145-1751194,1751323-1751424,
1751794-1751871,1751999-1752028,1752322-1753050
Length = 637
Score = 31.9 bits (69), Expect = 0.38
Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 2/99 (2%)
Frame = -1
Query: 488 VAGIFFVADLDALK-ISHFLQMTPMLIKKMVVASQDAMPFRQKGTHYLNTPTGFETIFNT 312
V+G+ DL + +F + LI ++ D P +N GF ++NT
Sbjct: 240 VSGVKLNFDLHVCEGYKNFNKAARDLIGRLQKVDGDNYPETLCRMFIINAGQGFRLLWNT 299
Query: 311 IKALMNEKNKKRLYVHNQNYE-EMYKYIPKDILPVEYGG 198
+K+ ++ K +++V Y+ ++ + I LP GG
Sbjct: 300 VKSFLDPKTTAKIHVLGNKYQSKLLEVIDPSELPEFLGG 338
>02_04_0624 + 24538095-24538183,24538429-24538612,24538725-24538886,
24538988-24539225,24539301-24539370,24539439-24539530,
24539799-24539836,24540018-24540039,24540462-24540618,
24540702-24540753,24542144-24542207,24542279-24542362,
24543418-24543543,24543622-24543818,24543903-24544091,
24544186-24544434,24544507-24544556,24544977-24545059,
24545164-24545449,24545751-24545794,24545878-24546626
Length = 1074
Score = 31.1 bits (67), Expect = 0.66
Identities = 19/76 (25%), Positives = 37/76 (48%)
Frame = -1
Query: 269 VHNQNYEEMYKYIPKDILPVEYGGNGGSIEEIIDYWRKKVKEYSDWLEEDDQYGTDESKR 90
+H ++YE++ + + PVE + I D+ RKK +++ + + + E
Sbjct: 819 LHEEDYEDVPDVLASE--PVEAECKSATNNTIFDHIRKKSRDFPNLMLSKSMDSSYEPLI 876
Query: 89 PGKPKTAEDMFGVEGS 42
K KT+ D FG++ S
Sbjct: 877 LKKMKTSGDQFGLDQS 892
>11_05_0072 - 18832152-18832341,18832470-18832582
Length = 100
Score = 30.3 bits (65), Expect = 1.2
Identities = 10/27 (37%), Positives = 21/27 (77%)
Frame = -1
Query: 179 EIIDYWRKKVKEYSDWLEEDDQYGTDE 99
+I++Y++K + +YSD+ +ED + +DE
Sbjct: 60 QILEYYKKFLAQYSDYEDEDSEEDSDE 86
>01_06_1698 -
39264075-39264468,39264545-39264696,39264780-39264830,
39264946-39265122,39265256-39265348,39265489-39265555,
39265695-39265768,39266007-39266088,39266182-39266255,
39266354-39266383,39266475-39266534,39267524-39268225
Length = 651
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 6/43 (13%)
Frame = -1
Query: 173 IDYWRKKVKEYSDWLE------EDDQYGTDESKRPGKPKTAED 63
+D ++ +K+Y +W+E E++ Y D+ PG+ K ED
Sbjct: 207 LDRYKMFLKQYKEWVEANRDRLEEESYKFDQDYYPGRRKRGED 249
>01_02_0024 + 10306193-10306247,10306536-10306717
Length = 78
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -1
Query: 203 GGNGGSIEEIIDYWRKKVKEYSDWLEEDDQYGTDESKRPGKP 78
GG GG EE+ ++WR+ V+ + D ++ D + G P
Sbjct: 10 GGGGGGAEEV-EHWRENVRLFRDSVDGDRKAAATPQVIAGNP 50
>05_03_0218 -
10437377-10437622,10437896-10438141,10438528-10438611,
10438720-10438854
Length = 236
Score = 28.7 bits (61), Expect = 3.5
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Frame = -1
Query: 347 NTPTGFETIFNTIK----ALMNEKNKKRLYVHN-QNYEEMYKYIPKDILPVEYGGNGGSI 183
NTP FE+ + IK A M+EK K LY +N ++++ + + D+L +GG
Sbjct: 145 NTPRIFESFWKIIKHFLEAKMSEK-VKFLYTNNPESHKIVSEMFDMDLLETAFGGRNSIT 203
Query: 182 EEIIDY 165
+I +Y
Sbjct: 204 IDIDNY 209
>01_05_0422 -
22018579-22018698,22019548-22019644,22019744-22019908,
22022274-22022339,22022441-22022540,22022662-22023304
Length = 396
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = -1
Query: 200 GNGGSIEEIIDYWRKKVKEYSDWLEEDDQYGTDESKRPGKPK 75
G GG +E + W + ++E D++ +D+++ + R PK
Sbjct: 114 GGGGEADEHMREWEEFLREDEDFINDDERFNLGDRIRALFPK 155
>07_03_1539 + 27567397-27568985,27569153-27569279,27569361-27569837
Length = 730
Score = 27.5 bits (58), Expect = 8.2
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Frame = -1
Query: 323 IFNTIKALMNEKNKKRLYVHNQNYEEMYKYIPKDILPVEYGGNGGSI----EEIIDYW 162
IF + +++EK+ L V N + YK++PK + + G GG + I++YW
Sbjct: 503 IFRAV-VILSEKSNSDLAVEVSNLAQAYKFLPK--VFDRFAGAGGFMFLQDHMILNYW 557
>05_04_0196 -
18964927-18965218,18965337-18965503,18966182-18966328,
18966419-18966650,18968087-18968241
Length = 330
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -1
Query: 125 EDDQYGTDESKRPGKPKTAEDMFG 54
+ D+ DES+RPGK K+ + M G
Sbjct: 243 DPDEDDDDESERPGKSKSPKTMLG 266
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,299,039
Number of Sequences: 37544
Number of extensions: 356667
Number of successful extensions: 1037
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1035
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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